Publications

Annual Reports

See below for SIMS’s Annual Reports (2022-):

2025 Annual Report

2024 Annual Report

2023 Annual Report

2022 Annual Report

Our Harbour Our Asset

SIMS Associate Fellow Caroline Hoisington

An overview of economic activities and values associated with Australia’s most iconic harbour and its use by the city that surrounds it. Sydney Institute of Marine Science Technical Report – Our Harbour Our Asset

Oceanography in the Days of Sail

Prof Ian Jones & Joyce Jones

The waters of the Pacific have played an important part in the development of the science of oceanography. Expeditions organised in the days of sail power were conducted in the face of hardships and dangers unknown today.

This book will be of interest to those drawn by the romance of the sea: to sailors, yachtsmen, and hydrographers. Click here to read the e-book.

Science of Gamay: A systematic review of current knowledge of Botany Bay

Stelling-Wood, T.P., et al.

There is growing desire for ecosystem-level management of urban waterways, but management efforts are often challenged by a lack of integrated knowledge. Gamay is no exception to this, despite the bay being the subject of much scientific research over the years.

This project systematically reviewed published literature, Traditional Ecological Knowledge and consulted with scientists to produce a review of Gamay that synthesises all published knowledge of Gamay’s aquatic ecosystems to identify key knowledge gaps and future research opportunities.

Click here to view the Science of Gamay report.

Journal Articles

See below for a selection of SIMS journal articles:

2024

Adedipe, D. T.; Chen, C.; Lai, R. W. S.; Xu, S.; Luo, Q.; Zhou, G.-J.; Boxall, A.; Brooks, B. W.; Doblin, M. A.; Wang, X.; Wang, J.; Leung, K. M. Y. (2024). Occurrence and potential risks of pharmaceutical contamination in global Estuaries: A critical review and analysis. Environment International, 192 Article 109031 DOI: 10.1016/j.envint.2024.109031

Ayoub, N. K., Chidichimo, M. P., Dever, E., Guo, X., Kim, S. Y., Krug, M., Míguez, B. M., Morris, T., Roughan, M. , Sprintall, J., Tanaka, K., Todd, R. E., Wilkin, J., &Aacutelvarez-Fanjul, E., Andres, M., Bosse, A., Edwards, C. A., Gula, J., Kerry, C. G., Miyazawa, Y., Oddo, P., Oka, E., and Zaba, K. D. (2024). Observing Ocean Boundary Currents: Lessons Learned from Six Regions with Mature Observational and Modeling Systems, opens in a new window Oceanography, August 2024. DOI: https://doi.org/10.5670/oceanog.2024.504

Barnett, A.; Jaine, F. R. A.; Bierwagen, S. L.; Lubitz, N.; Abrantes, K.; Heupel, M. R.; Harcourt, R.; Huveneers, C.; Dwyer, R. G.; Udyawer, V.; Simpfendorfer, C. A.; Miller, I. B.; Scott-Holland, T.; Kilpatrick, C. S.; Williams, S. M.; Smith, D.; Dudgeon, C. L.; Hoey, A. S.; Fitzpatrick, R.; Osborne, F. E.; Smoothey, A. F.; Butcher, P. A.; Sheaves, M.; Fisher, E. E.; Svaikauskas, M.; Ellis, M.; Kanno, S.; Cresswell, B. J.; Flint, N.; Armstrong, A. O.; Townsend, K. A.; Mitchell, J. D.; Campbell, M.; Peddemors, V. M.; Gustafson, J. A.; Currey-Randall, L. M. (2024). From little things big things grow: enhancement of an acoustic telemetry network to monitor broad-scale movements of marine species along Australia’s east coast. Movement Ecology, 12(1) Article 31 DOI: 10.1186/s40462-024-00468-8

Becker, A.; Butcher, P. A.; Morris, S.; Champion, C.; Peddemors, V. M.; Lowry, M. B.; Taylor, M. D. (2024). Interactions between White Sharks (Carcharodon carcharias) and artificial reefs along the east-coast of Australia. Fisheries Research, 273 Article 106961 DOI: 10.1016/j.fishres.2024.106961

Becker, A.; Dworjanyn, S. A.; Mos, B.; Niella, Y. V.; Smith, J. A.; Lowry, M. B.; Taylor, M. D. (2024). Residency and movement patterns of juvenile yellowfin bream Acanthopagrus australis, stocked on estuarine artificial reefs. Marine and Freshwater Research, 75(15) Article MF24041 DOI: 10.1071/MF24041

Bellotto, C.; Fowler, A. M.; Booth, D. J. (2024). Individual performance niches and responses to winter temperature change in three estuarine fishes from eastern Australia Marine Biology, 171 Article 193 DOI: 10.1007/s00227-024-04510-6

Bellotto, C.; Fowler, A. M.; Booth, D. J. (2024). Individual performance niches may buffer population responses to climate change in estuarine fishes Marine Biology, 171 Article 193 DOI: 10.1007/s00227-024-04510-6

Bellotto, C.; Fowler, A. M.; Booth, D. J. (2024). Overwintering performance of juvenile temperate estuarine fish Journal of Experimental Marine Biology and Ecology, 584 Article 152087 DOI: 10.1016/j.jembe.2025.152087

Birch, G.; Wang, X.; Liu, E. (2024). Human health risk assessment of metal-contaminated soils in Sydney estuary catchment (Australia) Environmental Geochemistry and Health, 46 Article 125 DOI: 10.1007/s10653-024-01898-4

Blount, C.; Worthington, D. G.; Byrne, M.; Chick, R. C.; Andrew, N. L. (2024). Aging of the sea urchin Centrostephanus rodgersii using demi-pyramid microstructure Fisheries Research, 270 2025-01-10 00:00:00 DOI: 10.1016/j.fishres.2023.106899

Bool, N.; Sumner, M. D.; Lea, M.-A.; McMahon, C. R.; Hindell, M. A. (2024). Hierarchical foraging strategies of migratory short-tailed shearwaters during the non-breeding stage Marine Biology, 171(5) Article 104 DOI: 10.1007/s00227-023-04370-6

Buenafe, K. C. V.; Everett, J. D.; Dunn, D. C.; Mercer, J.; Suthers, I. M.; Schilling, H. T.; Hinchliffe, C.; Dabalà, A.; Richardson, A. J. (2024). A global, historical database of tuna, billfish, and saury larval distributions. Scientific Data, 11(1) Article 29 DOI: 10.1038/s41597-023-02860-2

Burke, P. J.; Meyer, L.; Raoult, V.; Huveneers, C.; Williamson, J. E. (2024). Multi-disciplinary approach identifies pelagic nutrient linkage by sawsharks Reviews in Fish Biology and Fisheries, 34(4) 1567-1584 DOI: 10.1007/s11160-024-09888-6

Butcher, P. A.; Broadhurst, M. K.; Peddemors, V. M.; McGarty, A. J.; Cullis, B. R. (2024). Hooking efficiencies of SMART drumlines and their possible deployment rates vs gillnets for bather protection Frontiers in Marine Science, 11 Article 1513232 DOI: 10.3389/fmars.2024.1513232

Caley, A.; Marzinelli, E. M.; Byrne, M.; Mayer-Pinto, M. (2024). Artificial light at night and warming impact grazing rates and gonad index of the sea urchin Centrostephanus rodgersii Proceedings of the Royal Society B: Biological Sciences, 291(1978) Article 20240415 DOI: 10.1098/rspb.2024.0415

Caley, A.; Marzinelli, E. M.; Byrne, M.; Mayer‐Pinto, M. (2024). Antagonistic Effects of Light Pollution and Warming on Habitat‐Forming Seaweeds Ecology and Evolution, 14(10) A1–12 DOI: 10.1002/ece3.70420

Castro, L. C.; Vergés, A.; Straub, S. C.; Campbell, A. H.; Coleman, M. A.; Wernberg, T.; Steinberg, P.; Thomas, T.; Dworjanyn, S.; Cetina-Heredia, P.; Roughan, M.; Marzinelli, E. M. (2024). Effect of marine heatwaves and warming on kelp microbiota influence trophic interactions Molecular Ecology, 33(5) Article e17267 DOI: 10.1111/mec.17267

Chan, A. J.; Jaine, F. R. A.; Maron, F.; Williamson, J. E.; Schilling, H. T.; Smoothey, A. F.; Peddemors, V. M. (2024). Flapping about: trends and drivers of Australian cownose ray (Rhinoptera neglecta) coastal sightings at their southernmost distribution range Frontiers in Fish Science, 1 2025-01-16 00:00:00 DOI: 10.3389/frish.2023.1323633

Chapman, C. C.; Sloyan, B. M.; Schaeffer, A.; Suthers, I. M.; Pitt, K. A. (2024). Offshore Plankton Blooms via Mesoscale and Sub-Mesoscale Interactions With a Western Boundary Current Journal of Geophysical Research: Oceans, 129(8) Article e2023JC020547 DOI: 10.1029/2023JC020547

Clarke, T. M.; Whitmarsh, S. K.; Jaine, F. R. A.; Taylor, M. D.; Brodie, S.; Payne, N. L.; Butcher, P. A.; Broadhurst, M. K.; Davey, J.; Huveneers, C. (2024). Environmental drivers of yellowtail kingfish, Seriola lalandi, activity inferred through a continental acoustic tracking network Aquatic Conservation: Marine and Freshwater Ecosystems, 34(1) Article e4019 DOI: 10.1002/aqc.4019

Clem, K. R.; Raphael, M. N.; Adusumilli, S.; Amory, C.; Baiman, R.; Banwell, A. F.; Barreira, S.; Beadling, R. L.; Bozkurt, D.; Colwell, S.; Coy, L.; Datta, R. T.; Deb, P.; De Laat, J.; du Plessis, M.; Fernandez, D.; Fogt, R. L.; Fricker, H. A.; Gille, S. T.; Johnson, B.; Josey, S. A.; Keller, L. M.; Kramarova, N. A.; Kromer, J.; Lait, L. R.; Lazzara, M. A.; Lieser, J. L.; MacFerrin, M.; MacGilchrist, G. M.; MacLennan, M. L.; Marouchos, A.; Massom, R. A.; McMahon, C. R.; Mikolajczyk, D. E.; Mote, T. L.; Newman, P. A.; Norton, T.; Petropavlovskikh, I.; Pezzi, L. P.; Pitts, M.; Reid, P.; Santee, M. L.; Scambos, T. A.; Schulz, C.; Shi, J.-R.; Souza, E.; Stammerjohn, S.; Thomalla, S.; Tripathy, S. C.; Trusel, L. D.; Turner, K.; Yin, Z. (2024). Antarctica and the Southern Ocean Bulletin of the American Meteorological Society, 105(8) S331–S370 DOI: 10.1175/BAMS-D-24-0099.1

Connolly, R. M.; Herrera, C.; Rasmussen, J.; Buelow, C. A.; Sievers, M.; Jinks, K. I.; Brown, C. J.; Lopez‐Marcano, S.; Sherman, C. D. H.; Martínez‐Baena, F.; Martin, B.; Baring, R.; Reeves, S. E. (2024). Estimating enhanced fish production on restored shellfish reefs using automated data collection from underwater videos Journal of Applied Ecology, 61(4) 633-646 DOI: 10.1111/1365-2664.14617

DiBattista, J. D.; Fowler, A. M.; Shalders, T. C.; Williams, R. J.; Wilkinson, S. (2024). Tree of life metabarcoding can serve as a biotic benchmark for shifting baselines in urbanized estuaries Environmental Research, 258 Article 119454 DOI: 10.1016/j.envres.2024.119454

Eckert, C.; Hernandez-Jaramillo, D. C.; Medcraft, C.; Harrison, D. P.; Kelaher, B. P. (2024). Drone-Based Measurement of the Size Distribution and Concentration of Marine Aerosols above the Great Barrier Reef Drones, 8(7) Article 292 DOI: 10.3390/drones8070292

Feary, D. A.; Fowler, A. M.; Booth, D. J. (2024). Predator-avoidance behaviour of target and non-target temperate reef fishes is lower in areas protected from fishing Marine Biology, 171(3) DOI: 10.1007/s00227-023-04382-2

Firth, L. B.; Bone, J.; Bartholomew, A.; Bishop, M. J.; Bugnot, A.; Bulleri, F.; Chee, S.-Y.; Claassens, L.; Dafforn, K. A.; Fairchild, T. P.; Hall, A. E.; Hanley, M. E.; Komyakova, V.; Lemasson, A. J.; Loke, L. H. L.; Mayer-Pinto, M.; Morris, R.; Naylor, L.; Perkins, M. J.; Pioch, S.; Porri, F.; O’Shaughnessy, K. A.; Schaefer, N.; Strain, E. A.; Toft, J. D.; Waltham, N.; Aguilera, M.; Airoldi, L.; Bauer, F.; Brooks, P.; Burt, J.; Clubley, C.; Cordell, J. R.; Espinosa, F.; Evans, A. J.; Farrugia-Drakard, V.; Froneman, W.; Griffin, J. N.; Hawkins, S. J.; Heery, E.; Herbert, R. J. H.; Jones, E.; Leung, K. M. Y.; Moore, P.; Sempere-Valverde, J.; Sengupta, D.; Sheaves, M.; Swearer, S.; Thompson, R. C.; Todd, P.; Knights, A. M. (2024). Coastal greening of grey infrastructure: An update on the state of the art. Proceedings of the Institution of Civil Engineers: Maritime Engineering, 177(2) 35-67 DOI: 10.1680/jmaen.2023.003

Foster-Dyer, R. T. N.; Goetz, K. T.; Iwata, T.; Holser, R. R.; Michael, S. A.; Pritchard, C.; Childerhouse, S.; Costa, D. P.; Ainley, D. G.; Pinkerton, M. H.; LaRue, M. A. (2024). Prey targeted by lactating Weddell seals (Leptonychotes weddellii) in Erebus Bay, Antarctica Polar Biology, 47 1187-1202 DOI: 10.1007/s00300-024-03294-1

Garthwin, R. G.; Poore, A. G. B.; Ferretto, G.; Wright, J. T.; Vergés, A. (2024). Seagrass Tolerance to Simulated Herbivory Along a Latitudinal Gradient: Predicting the Potential Effects of Tropicalisation. Ecology and Evolution, 14(11) Article e70561 DOI: 10.1002/ece3.70561

Gill, R. L.; Fleck, R.; Chau, K.; Westerhausen, M. T.; Lockwood, T. E.; Violi, J. P.; Irga, P. J.; Doblin, M. A.; Torpy, F. R. (2024). Fine particle pollution during megafires contains potentially toxic elements. Environmental Pollution, 344 Article 123306 DOI: 10.1016/j.envpol.2024.123306

Goddard, B. K.; Guillemin, T. A.; Schilling, H. T.; Hughes, J. M.; Brodie, S.; Green, C. P.; Harcourt, R.; Huveneers, C.; Ierodiaconou, D.; Suthers, I. M.; Taylor, M. D.; Tracey, S. R.; Camilieri-Asch, V.; Clarke, T. M.; Dwyer, R. G.; Hilbert, C.; Holdsworth, J.; Mitchell, J.; Pepperell, J.; Simpson, E.; Udyawer, V.; Jaine, F. R. A. (2024). Half a century of citizen science tag-recapture data reveals stock delineation and cross-jurisdictional connectivity of an iconic pelagic fish. Reviews in Fish Biology and Fisheries, 34(4) 1433-1449 DOI: 10.1007/s11160-024-09880-0

Gray, C. A. (2024). Historic, pre-stock enhancement, demographic conditions of exploited populations of dusky flathead, Platycephalus fuscus, in eastern Australia Aquaculture and Fisheries, 9(2) 314-323 DOI: 10.1016/j.aaf.2022.07.001

Hanamseth, R.; Schilling, H. T.; Johnson, D. D.; Suthers, I. M.; Taylor, M. D. (2024). Abundance and Distribution of Blue Swimmer Crab in Response to Environmental Variation Across Two Contrasting Estuaries Estuaries and Coasts, 47(4) 1064-1074 DOI: 10.1007/s12237-024-01347-6

Hart, J. L.; Smith, R. L.; Poore, A. G. B.; Erickson, K. R.; Figueira, W. F.; Bishop, M. J.; O’Connor, W. A.; Gribben, P. E. (2024). Habitat-setting affects biodiversity while predation determines oyster survival on experimental oyster reefs Restoration Ecology, 32(4) Article e14133 DOI: 10.1111/rec.14133

Hemming, M.; Roughan, M.; Schaeffer, A. (2024). Exploring multi-decadal time series of temperature extremes in Australian coastal waters Earth System Science Data, 16 887-901 DOI: 10.5194/essd-16-887-2024

Hewitt, D. E.; Johnson, D. D.; Erskine, L.; Harasti, D.; Suthers, I. M.; Taylor, M. D. (2024). Patterns in abundance, size and space-use of Giant Mud Crab (Scylla serrata) in a temperate marine protected area Aquatic Conservation: Marine and Freshwater Ecosystems, 34(5) Article e4167 DOI: 10.1002/aqc.4167

Hinchliffe, C.; Schilling, H. T.; Pepin, P.; Kar, F.; Falster, D. S.; Suthers, I. M. (2024). Rapid inference of larval fish recruitment potential from size spectrum models. Canadian Journal of Fisheries and Aquatic Sciences, 81(11) 1581-1593 DOI: 10.1139/cjfas-2024-0067

Hinners, J.; Argyle, P. A.; Walworth, N. G.; Doblin, M. A.; Levine, N. M.; Collins, S. (2024). Multi-trait diversification in marine diatoms in constant and warmed environments. Proceedings of the Royal Society B: Biological Sciences, 291(2019) Article 20232564 DOI: 10.1098/rspb.2023.2564

Howarth, N.; Scanes, E.; Byrne, M.; Ross, P. M. (2024). Ocean warming and Marine Heatwaves unequally impact juvenile introduced and native oysters with implications for their coexistence and future distribution Scientific Reports, 14(1) 2025-01-14 00:00:00 DOI: 10.1038/s41598-024-71534-9

Howie, A. H.; Reeves, S. E.; Gillies, C. L.; Bishop, M. J. (2024). Integration of social data into restoration suitability modelling for oyster reefs Ecological Indicators, 158 2025-01-15 00:00:00 DOI: 10.1016/j.ecolind.2023.111531

Hunt, E.; Bradford, R. W.; Booth, D. J.; Doak, C.; Patterson, T. A.; Peddemors, V. M. (2024). Ontogenetic change in body shape for white sharks, Carcharodon carcharias, in Australian waters Journal of Fish Biology DOI: 10.1111/jfb.16016

Huveneers, C.; Blount, C.; Bradshaw, C. J. A.; Butcher, P. A.; Lincoln Smith, M. P.; Macbeth, W. G.; McPhee, D. P.; Moltschaniwskyj, N.; Peddemors, V. M.; Green, M. (2024). Shifts in the incidence of shark bites and efficacy of beach-focussed mitigation in Australia Marine Pollution Bulletin, 198 Article 115855 DOI: 10.1016/j.marpolbul.2023.115855

Kerry, C.G., Roughan, M., Keating, S., Gwyther, D., Brassington, G., Siripatana, A., and Marcos A. C. Souza, J. (2024). Comparison of 4-dimensional variational and ensemble optimal interpolation data assimilation systems using a Regional Ocean Modeling System (v3.4) configuration of the eddy-dominated East Australian Current system, opens in a new window Geoscientific Model Development, Mar 2024. DOI: https://doi.org/10.5194/gmd-17-2359-2024

Kinsela, M. A.; Morris, B. D.; Ingleton, T. C.; Doyle, T. B.; Sutherland, M. D.; Doszpot, N. E.; Miller, J. J.; Holtznagel, S. F.; Harley, M. D.; Hanslow, D. J. (2024). Nearshore wave buoy data from southeastern Australia for coastal research and management. Scientific Data, 11 Article 190 DOI: 10.1038/s41597-023-02865-x

Kirby, R. L.; Froehlich, C. Y. M.; Greaves, S.; Klanten, O. S.; Wong, M. Y. L. (2024). Lack of population structure in an important fishery species of mud shrimp, Trypaea australiensis Fisheries Management and Ecology, 31(3) Article e12682 DOI: 10.1111/fme.12682

Knights, A. M.; Lemasson, A. J.; Firth, L. B.; Beaumont, N.; Birchenough, S.; Claisse, J.; Coolen, J. W. P.; Copping, A.; De Dominicis, M.; Degraer, S.; Elliott, M.; Fernandes, P. G.; Fowler, A. M.; Frost, M.; Henry, L.-A.; Hicks, N.; Hyder, K.; Jagerroos, S.; Love, M.; Lynam, C.; Macreadie, P. I.; McLean, D.; Marlow, J.; Mavraki, N.; Montagna, P. A.; Paterson, D. M.; Perrow, M. R.; Porter, J.; Bull, A. S.; Schratzberger, M.; Shipley, B.; van Elden, S.; Vanaverbeke, J.; Want, A.; Watson, S. C. L.; Wilding, T. A.; Somerfield, P. J. (2024). To what extent can decommissioning options for marine artificial structures move us toward environmental targets? Journal of Environmental Management, 350 Article 119644 DOI: 10.1016/j.jenvman.2023.119644

Leong, R. C.; Bugnot, A. B.; Ross, P. M.; Erickson, K. R.; Gibbs, M. C.; Marzinelli, E. M.; O’Connor, W. A.; Parker, L. M.; Poore, A. G. B.; Scanes, E.; Gribben, P. E. (2024). Recruitment of a threatened foundation oyster species varies with large and small spatial scales Ecological Applications, 34(4) Article e2968 DOI: 10.1002/eap.2968

Lubitz, N.; Daly, R.; Smoothey, A. F.; Vianello, P.; Roberts, M. J.; Schoeman, D. S.; Sheaves, M.; Cowley, P. D.; Dagorn, L.; Forget, F. G.; Soria, M.; Peddemors, V. M.; Filmalter, J. D.; Butcher, P. A.; Brett, G.; Barnett, A. (2024). Climate change-driven cooling can kill marine megafauna at their distributional limits. Nature Climate Change, 14(5) 526-535 DOI: 10.1038/s41558-024-01966-8

Malan, N., Roughan, M., Hemming, M., , Ingleton, T. (2024). Quantifying coastal freshwater extremes during unprecedented rainfall using long timeseries multi-platform salinity observations, opens in a new window Nature Communications, Jan 2024. DOI: https://doi.org/10.1038/s41467-023-44398-2

Martin, B.; Doane, M. P.; Henkens, J.; Morgan, J. A. T.; Inglis, L.; Peddemors, V. M.; Dinsdale, E. A.; Huveneers, C.; Meyer, L. (2024). Who bit the boat? New DNA collection and genomic methods enable species identification in suspected shark-related incidents Forensic Science International: Genetics, 72 Article 103087 DOI: 10.1016/j.fsigen.2024.103087

McGrath, A. H.; Lema, K.; Egan, S.; Wood, G.; Gonzalez, S. V.; Kjelleberg, S.; Steinberg, P. D.; Marzinelli, E. M. (2024). Disentangling direct vs indirect effects of microbiome manipulations in a habitat-forming marine holobiont (npj Biofilms and Microbiomes, (2024), 10, 1, (33), 10.1038/s41522-024-00503-x) npj Biofilms and Microbiomes, 10(1) Article 33 DOI: 10.1038/s41522-024-00503-x

McKibbin, O.; Vergés, A.; Pottier, P.; Mayer Pinto, M. (2024). Marine infrastructure support fewer producers and more filter feeders than natural habitats: a review and meta-analysis Environmental Research Letters, 19(11) Article 113005 DOI: 10.1088/1748-9326/ad7ee1

McLaren, E. J.; Sommer, B.; Pandolfi, J. M.; Beger, M.; Byrne, M. (2024). Taxa-dependent temporal trends in the abundance and size of sea urchins in subtropical eastern Australia Ecology and Evolution, 14(5) Article e11412 DOI: 10.1002/ece3.11412

McLellan, S. L.; Chariton, A.; Codello, A.; McClary-Gutierrez, J. S.; Schussman, M. K.; Marzinelli, E. M.; O’Neil, J. M.; Schott, E. J.; Bowen, J. L.; Vineis, J. H.; Maignien, L.; Lemonnier, C.; Perennou, M.; Gibb, K. S.; Zhou, G.-J.; Leung, K. M. Y.; Kirs, M.; Griffith, J. F.; Steele, J. A.; Swearer, S. E.; O’Brien, A. L.; Song, D.; Liang, S.; Li, J.; Airoldi, L.; Mancuso, F. P.; Salomon, P. S.; Silva-Lima, A. W.; Pereira, R. C.; Boehm, A. B.; Lim, E. W. X.; Wuertz, S.; Fernández, E.; Teira, E.; Liao, M.-L.; Dong, Y.-W.; Steinberg, P. D. (2024). Universal microbial indicators provide surveillance of sewage contamination in harbours worldwide Nature Water, 2(11) 1061-1070 DOI: 10.1038/s44221-024-00315-5

Miller, M. E.; Liggins, G. W. (2024). Hermit crabs associated with catches from the eastern rock lobster (Sagmariasus verreauxi) fishery along the coast of NSW, Australia Fisheries Research, 280 Article 107154 DOI: 10.1016/j.fishres.2024.107154

Mitchell, J. D.; Camilieri-Asch, V.; Gudge, S.; Jaine, F. R. A.; Peddemors, V. M.; Langlois, T. J. (2024). Applying acoustic telemetry, vessel tracking and fisher knowledge to investigate and manage fisher-shark conflict at Lord Howe Island, Australia Marine Biology, 171(12) 1–21 DOI: 10.1007/s00227-024-04549-

Murphy, K.; Fierro Arcos, L. D.; Rohr, T. W.; Green, D. B.; Novaglio, C.; Baker, K.; Ortega-Cisneros, K.; Eddy, T.; Harrison, C. S.; Hill, S.; Keith, P.; Cataldo-Mendez, C.; Petrik, C. M.; Pinkerton, M.; Spence, P.; Stollberg, I.; Subramaniam, R.; Trebilco, R.; Tulloch, V.; Palacios-Abrantes, J.; Bestley, S.; Bianchi, D.; Boyd, P. W.; Buchanan, P. J.; Bryndum-Buchholz, A.; Coll, M.; Corney, S. P.; Datta, S.; Everett, J. D.; Forestier, R.; Fulton, B.; Galton-Fenzi, B. K.; Guibourd de Luzinais, V.; Heneghan, R.; Mason, J. G.; Maury, O.; McMahon, C. R.; Murphy, E. J.; Richardson, A.; Tittensor, D.; Spillias, S.; Steenbeek, J. G.; Veytia, D.; Blanchard, J. L. (2024). Developing a Southern Ocean Marine Ecosystem Model Ensemble To Assess Climate Risks and Uncertainties Earth’s Future DOI: 10.1029/2024EF004849

Ochwada-Doyle, F. A.; Miles, N.; Hughes, J. M.; Murphy, J. J.; Lowry, M. B.; West, L.; Taylor, M. D. (2024). Exploring spatio-temporal changes in coastal recreational fisheries and potential links to extreme weather events PLoS ONE, 19(2025-06-06 00:00:00) Article e0305106 DOI: 10.1371/journal.pone.0305106

Palmer, J.; Bugnot, A. B.; Filippini, G.; Gribben, P. E.; Varkey, D.; Erickson, K.; Dafforn, K. A. (2024). The influence of bioturbator activity on sediment bacterial structure and function is moderated by environment Marine Environmental Research, 201 Article 106702 DOI: 10.1016/j.marenvres.2024.106702

Postaire, B. D.; Devloo-Delva, F.; Brunnschweiler, J. M.; Charvet, P.; Chen, X.; Cliff, G.; Daly, R.; Drymon, J. M.; Espinoza, M.; Fernando, D.; Glaus, K.; Grant, M. I.; Hernandez, S.; Hyodo, S.; Jabado, R. W.; Jaquemet, S.; Johnson, G.; Naylor, G. J. P.; Nevill, J. E. G.; Pathirana, B. M.; Pillans, R. D.; Smoothey, A. F.; Tachihara, K.; Tillet, B. J.; Valerio-Vargas, J. A.; Lesturgie, P.; Magalon, H.; Feutry, P.; Mona, S. (2024). Global genetic diversity and historical demography of the Bull Shark Journal of Biogeography, 51(4) 632-648 DOI: 10.1111/jbi.14774

Rigg, A. L.; Bellotto, C.; Fowler, A. M.; Booth, D. J. (2024). Staining protocols affect use of otolith to estimate the demography of the damselfish sergeant major (Abudefduf vaigiensis) Journal of Fish Biology, 104(3) DOI: 10.1111/jfb.15601

Roncolato, F.; Fellowes, T. E.; Duce, S.; Mora, C.; Johansson, O.; Strachan, I.; Bugnot, A. B.; Erickson, K.; Figueira, W.; Gribben, P. E.; Pine, C.; Morgan, B.; Vila-Concejo, A. (2024). Ecomorphodynamics of oyster reefs and their influence on oyster reef morphology Geomorphology, 456 Article 109213 DOI: 10.1016/j.geomorph.2024.109213

Rourke, M. L.; Broadhurst, M. K.; Fowler, A. M.; Hughes, J. M.; DiBattista, J. D.; Furlan, E. M. (2024). Correlated environmental DNA and electrofished estimates of relative biomass for golden perch, Macquaria ambigua Frontiers in Fish Science, 2 Article 1358572 DOI: 10.3389/frish.2024.1358572

Ryan, L. A.; Gennari, E.; Slip, D. J.; Collin, S. P.; Peddemors, V. M.; Huveneers, C.; Chapuis, L.; Hemmi, J. M.; Hart, N. S. (2024). Counterillumination reduces bites by Great White sharks Current Biology, 34(24) 5789-5795 DOI: 10.1016/j.cub.2024.10.042

Sasaki, M.; Monaco, C. J.; Booth, D. J.; Nagelkerken, I. (2024). Ocean warming and novel species interactions boost growth and persistence of range‐extending tropical fishes but challenge that of sympatric temperate species in temperate waters Journal of Biogeography, 51(11) 2243-2258 DOI: 10.1111/jbi.14983

Schaefer, N.; Bishop, M. J.; Bugnot, A. B.; Foster-Thorpe, C.; Herbert, B.; Hoey, A. S.; Mayer-Pinto, M.; Nakagawa, S.; Sherman, C. D. H.; Vozzo, M. L.; Dafforn, K. A. (2024). Influence of habitat features on the colonisation of native and non-indigenous species Marine Environmental Research, 198 Article 106498 DOI: 10.1016/j.marenvres.2024.106498

Schaefer, N.; Bishop, M. J.; Bugnot, A. B.; Herbert, B.; Hoey, A. S.; Mayer-Pinto, M.; Sherman, C. D. H.; Foster-Thorpe, C.; Vozzo, M. L.; Dafforn, K. A. (2024). Variable effects of substrate colour and microtexture on sessile marine taxa in Australian estuaries Biofouling, 40(2) DOI: 10.1080/08927014.2024.2332710

Setyawan, E.; Erdmann, M. V.; Mambrasar, R.; Ambafen, O.; Hasan, A. W.; Izuan, M.; Mofu, I.; Putra, M. I. H.; Sianipar, A. B.; Constantine, R.; Stevenson, B. C.; Jaine, F. R. A. (2024). Spatial connectivity of reef manta rays across the Raja Ampat archipelago, Indonesia Royal Society Open Science, 11(4) Article 230895 DOI: 10.1098/rsos.230895

Sewell, M. A.; Prowse, T. A. A.; Selvakumaraswamy, P.; Byrne, M. (2024). Larval development in the apodid sea cucumber Chiridota gigas, with a focus on coelom development and the serotonergic nervous system during metamorphosis Invertebrate Biology, 143(2) Article e12433 DOI: 10.1111/ivb.12433

Siboni, N.; King, W. L.; Williams, N. L. R.; Scanes, E.; Giardina, M.; Green, T. J.; Ostrowski, M.; O’Connor, W.; Dove, M.; Labbate, M.; Seymour, J. R. (2024). Increased abundance of potentially pathogenic Vibrio and a marine heatwave co-occur with a Pacific Oyster summer mortality event Aquaculture, 583 Article 740618 DOI: 10.1016/j.aquaculture.2024.740618

Smallwood, C. B.; Ryan, K. L.; Flanagan, E. A.; Maggs, J. Q.; Ochwada-Doyle, F. A.; Tracey, S. R. (2024). Spiny lobster recreational fisheries in Australia and New Zealand: An overview of regulations, monitoring, assessment and management Fisheries Research, 280 Article 107149 DOI: 10.1016/j.fishres.2024.107149

Sobral, F., Roughan, M., Malan, N., & Li,J. (2024). Mean‐state and seasonal variability in temperature structure and heat transport in the East Australian Current System from a multi‐decadal regional ocean model. Journal of Geophysical Research: Oceans, 129,e2023JC020438. https://doi.org/10.1029/2023JC020438

Steinberg, R. K.; Turnbull, J.; Ainsworth, T. D.; Dafforn, K. A.; Poore, A. G. B.; Johnston, E. L. (2024). Impacts of necrotising disease on the Endangered cauliflower soft coral (Dendronephthya australis) Marine and Freshwater Research, 75(3) Article MF23144 DOI: 10.1071/MF23144

Stewart, J.; Broadhurst, M. K.; Tolhurst, D. J. (2024). Using otolith weights to estimate age for eastern sea garfish, Hyporhamphus australis Frontiers in Fish Science, 2 DOI: 10.3389/frish.2024.1518118

Strain, E. M. A.; Bastiaansen, A.; Thomson, R. J.; Stuart-Smith, J.; Vila-Concejo, A.; Byrne, M. (2024). A review of the conservation status and survey methods for the live-bearing sea star Parvulastra vivipara Endangered Species Research, 54 341-351 DOI: 10.3354/ESR01346

Taylor, M. D.; Gaston, T. F.; Raoult, V.; Hughes, J. M.; Murphy, J.; Hewitt, D. E.; Connolly, R. M.; Ochwada-Doyle, F. A. (2024). Recreational fishing expenditure as an indicator of coastal wetland habitat value Environmental Science: Advances, 3(9) 1259-1270 DOI: 10.1039/d3va00386h

Taylor, M. D.; Hughes, J. M.; Murphy, J.; Ochwada-Doyle, F. A. (2024). Profiling Inter-Specific and Inter-Estuarine Variation in Per- and Polyfluoroalkyl Substances Across Two Recreational Fishing Havens Fisheries Management and Ecology DOI: 10.1111/fme.12762

Vadillo Gonzalez, S.; Hurd, C. L.; Britton, D.; Bennett, E.; Steinberg, P. D.; Marzinelli, E. M. (2024). Effects of temperature and microbial disruption on juvenile kelp Ecklonia radiata and its associated bacterial community Frontiers in Marine Science, 10 Article 1332501 DOI: 10.3389/fmars.2023.1332501

Veenhof, R. J.; Coleman, M. A.; Champion, C.; Dworjanyn, S. A.; Venhuizen, R.; Kearns, L.; Marzinelli, E. M.; Pettersen, A. K. (2024). Novel high-throughput oxygen saturation measurements for quantifying the physiological performance of macroalgal early life stages Journal of Phycology, 60(5) 1161-1172 DOI: 10.1111/jpy.13489

Vila-Concejo, A.; Fellowes, T. E.; Gallop, S.; Alejo, I.; Angnuureng, D. B.; Benavente, J.; Bosma, J. W.; Brempong, E. K.; Dissanayake, P.; Gazi, M. Y.; González-Villanueva, R.; Guimarães, R.; Kennedy, D. M.; Largier, J. L.; Van Der Lugt, M. A.; Montes, J.; Orescanin, M.; Pattiaratchi, C. B.; Cajueiro Carneiro Pereira, L.; Marinho Da Costa Pereira, R. L.; Price, T.; Rahbani, M.; Del Río, L.; Rosenthal, M.; De Schipper, M.; Ton, A. M.; Winklerprins, L.; Chen, Z. (2024). Morphodynamics and management challenges for beaches in modified estuaries and bays Cambridge Prisms: Coastal Futures, 2 Article e11 DOI: 10.1017/cft.2024.7

Volzke, S.; Cleeland, J. B.; McMahon, C. R.; Hindell, M. A.; Corney, S. P.; Wotherspoon, S. J. (2024). Modeling climate influences on male survival in the highly polygynous southern elephant seal (Mirounga leonina) Ecosphere, 15(6) Article e4904 DOI: 10.1002/ecs2.4904

Vozzo, M. L.; Bishop, M. J.; Dafforn, K. A.; Steinberg, P. D.; Strain, E. M. A.; Mayer Pinto, M. (2024). From experiment to intervention: A case study of scaling up marine eco-engineering from research to application Environmental Science and Policy, 158 Article 103800 DOI: 10.1016/j.envsci.2024.103800

Vozzo, M. L.; Buelow, C. A.; Sievers, M.; Adame, M. F.; Branson, P.; Brown, M.; Crosswell, J. R.; Doropoulos, C.; Gilby, B. L.; Martinez-Baena, F.; Reeves, S.; Rullens, V.; Steven, A.; Xiao, Z.; Dahle, K.; Silliman, B.; ter Hofstede, R.; van Koningsveld, M.; Saunders, M. I. (2024). Achieving at-scale seascape restoration by optimising cross-habitat facilitative processes NPJ Ocean Sustainability, 3(1) Article 57 DOI: 10.1038/s44183-024-00095-1

Walker, D. A.; Gribben, P. E.; Glasby, T. M.; Marzinelli, E. M.; Varkey, D. R.; Dafforn, K. A. (2024). Above and below-ground bacterial communities shift in seagrass beds with warmer temperatures Frontiers in Marine Science, 11 2025-01-15 00:00:00 DOI: 10.3389/fmars.2024.1374946

Webb, M.; Clements, M.; Selvakumaraswamy, P.; McLaren, E.; Byrne, M. (2024). Chemosensory behaviour of juvenile crown-of-thorns sea star (Acanthaster sp.), attraction to algal and coral food and avoidance of adult conspecifics Proceedings of the Royal Society B: Biological Sciences, 291(2023) Article 20240623 DOI: 10.1098/rspb.2024.0623

Yong, C.; Harcourt, R.; McMahon, C. R.; Costa, D. P.; Huckstadt, L. A.; Hindell, M.; Jonsen, I. (2024). Dive descent rate as a buoyancy indicator to infer body condition of Weddell seals in the Antarctic Marine Mammal Science, 40(4) Article e13147 DOI: 10.1111/mms.13147

2023

Adamczak, SK, McHuron, EA, Christiansen, F, Dunkin, R, McMahon, CR, Noren, S, Enrico Pirotta, David AS Rosen, Sumich, J & Costa, DP 2023, ‘Growth in marine mammals: a review of growth patterns, composition and energy investment’, Growth in marine mammals: a review of growth patterns, composition and energy investment, vol. 11, no. 1. https://doi.org/10.1093/conphys/coad035
Ajani, P, Savela, H, Kahlke, T, Harrison, DD, Jeffries, TC, Kohli, GS, Verma, A, Olivier Laczka, Doblin, MA, Seymour, JR, Larsson, ME, Potts, J, Scanes, P, Gribben, PE, Harrison, L & Murray, SA 2023, ‘Response of planktonic microbial assemblages to disturbance in an urban sub-tropical estuary’, Water Research, vol. 243, Elsevier BV, pp. 120371–120371. https://doi.org/10.1016/j.watres.2023.120371
Akram, H, Hussain, S, Mazumdar, P, Kah Ooi Chua, Butt, TE & Jennifer Ann Harikrishna 2023, ‘Mangrove Health: A Review of Functions, Threats, and Challenges Associated with Mangrove Management Practices’, Forests, vol. 14, Multidisciplinary Digital Publishing Institute, no. 9, pp. 1698–1698. https://doi.org/10.3390/f14091698
Alexander Harry McGrath, Lema, KA, Egan, S, Wood, G, Sebastian Vadillo Gonzalez, Staffan Kjelleberg, Steinberg, PD & Marzinelli, EM 2023, ‘Disentangling direct vs indirect effects of microbiome manipulations in a habitat-forming marine holobiont’, Research Square (Research Square), Research Square (United States). https://doi.org/10.21203/rs.3.rs-3012963/v1
Appert, C, V Udyawer, C Simpfendorfer, Heupel, M, Scott, M, LM Currey-Randall, AR Harborne, F Jaine & Chin, A 2023, ‘Use, misuse, and ambiguity of indices of residence in acoustic telemetry studies’, Marine Ecology Progress Series, vol. 714, Inter-Research, pp. 27–44. https://doi.org/10.3354/meps14300
Becker, A, Lowry, MB, Fowler, AM & Taylor, MD 2023, ‘Hydroacoustic surveys reveal the distribution of mid-water fish around two artificial reef designs in temperate Australia’, Fisheries Research, vol. 257, p. 106509. https://doi.org/10.1016/j.fishres.2022.106509
Bertram, A, Bell, JD, Brauer, CJ, Fowler, AJ, Hamer, PA, Sandoval‐Castillo, J, Stewart, J, Wellenreuther, M & Beheregaray, LB 2023a, ‘Biogeographic provinces and genomically delineated stocks are congruent in snapper (Chrysophrys auratus) from southeastern Australia’, Ices Journal of Marine Science, vol. 80, Oxford University Press, no. 5, pp. 1422–1430. https://doi.org/10.1093/icesjms/fsad068
Bertram, A, Bell, JD, Brauer, CJ, Fowler, AJ, P. Allen Hammer, Sandoval‐Castillo, J, Stewart, J, Wellenreuther, M & Beheregaray, LB 2023b, ‘Bioregional boundaries and genomically-delineated stocks in snapper (Chrysophrys auratus) from southeastern Australia’, bioRxiv (Cold Spring Harbor Laboratory), Cold Spring Harbor Laboratory. https://doi.org/10.1093/icesjms/fsad068
Bishop, MJ, Lanham, BS, Esquivel‐Muelbert, JR, Cole, VJ, Faelnar, KM, Jenkins, C, Keating, JP, Martínez‐Baena, F & O’Connor, WA 2023, ‘Oyster reef restoration – aquaculture interactions: maximizing positive synergies’, Frontiers in Marine Science, vol. 10, Frontiers Media. 10.3389/fmars.2023.1162487
Bourreau, L, Etienne Pauthenet, Loïc Le Ster, Picard, B, Portela, E, Jean‐Baptiste Sallée, McMahon, CR, Harcourt, R, Hindell, MA, Christophe Guinet, Bestley, S, Jean‐Benoît Charrassin, DuVivier, AK, Sylvester, Z, Krumhardt, KM, Stéphanie Jenouvrier & Labrousse, S 2023, ‘First description of in situ chlorophyll fluorescence signal within East Antarctic coastal polynyas during fall and winter’, Frontiers in Marine Science, vol. 10, Frontiers Media. https://doi.org/10.3389/fmars.2023.1186403
Boyer, T, Zhang, H, O’Brien, KD, Reagan, JR, Diggs, S, Freeman, E, Garcia, HE, Heslop, E, Hogan, P, Huang, B, Jiang, L-Q, Kozyr, A, Liu, C, Locarnini, RA, Mishonov, AV, Paver, CR, Wang, Z, Zweng, MM, Alin, SR & Barbero, L 2023, ‘Effects of the Pandemic on Observing the Global Ocean’, Bulletin of the American Meteorological Society, vol. 104, American Meteorological Society, no. 2, pp. E389–E410. https://doi.org/10.1175/BAMS-D-21-0210.1
Bugnot, AB, Dafforn, KA, Erickson, K, McGrath, A, O’Connor, WA & Gribben, PE 2023, ‘Reintroducing a keystone bioturbator can facilitate microbial bioremediation in urban polluted sediments’, Environmental Pollution, vol. 324, p. 121419. https://doi.org/10.1016/j.envpol.2023.121419
Butcher, PA, Lee, KA, Brand, CP, Gallen, C, Green, M, Smoothey, AF & Peddemors, VM 2023, ‘Capture Response and Long-Term Fate of White Sharks (Carcharodon carcharias) after Release from SMART Drumlines’, Biology, vol. 12, Multidisciplinary Digital Publishing Institute, no. 10, pp. 1329–1329. https://doi.org/10.3390/biology12101329
Byrne, M, Deaker, DJ, Gibbs, M, Selvakumaraswamy, P & Clements, M 2023, ‘Juvenile waiting stage crown‐of‐thorns sea stars are resilient in heatwave conditions that bleach and kill corals’, Global Change Biology, vol. 29, Wiley-Blackwell, no. 23, pp. 6493–6502. https://doi.org/10.1111/gcb.16946
Champion, C, Lawson, JR, Pardoe, J, Cruz, DO, Fowler, AM, Fabrice R. A. Jaine, Schilling, HT & Coleman, MA 2023, ‘Multi-criteria analysis for rapid vulnerability assessment of marine species to climate change’, Climatic Change, vol. 176, Springer Science+Business Media, no. 8. https://doi.org/10.1007/s10584-023-03577-2
Christensen, AB, Taylor, G, Lamare, M & Byrne, M 2023, ‘The added costs of winter ocean warming for metabolism, arm regeneration and survival in the brittle star Ophionereis schayeri’, Journal of Experimental Biology, vol. 226, no. 3. 10.1242/jeb.244613
Clain, C, Stewart, J, Fowler, A & Diamond, S 2021, ‘Reproductive biology of largehead hairtail (Trichiurus lepturus) in south-eastern Australia’, Aquaculture and Fisheries, vol. 8, no. 2. https://doi.org/10.1016/j.aaf.2021.09.008
Clain, C, Stewart, J, Fowler, AM & Diamond, SL 2023, ‘Age, growth and length-to-weight relationship of largehead hairtail (Trichiurus lepturus) in south-eastern Australia suggest a distinct population’, Aquaculture and Fisheries, Elsevier BV. 10.1016/j.aaf.2021.09.008
Clarke, TM, Whitmarsh, SK, Fabrice R. A. Jaine, Taylor, MD, Brodie, S, Payne, NL, Butcher, PA, Broadhurst, MK, Davey, J & Huveneers, C 2023, ‘Environmental drivers of yellowtail kingfish, Seriola lalandi, activity inferred through a continental acoustic tracking network’, Aquatic Conservation: Marine and Freshwater Ecosystems, Wiley-Blackwell. https://doi.org/10.1002/aqc.4019
Devens, HR, Davidson, PL, Byrne, M & Wray, GA 2023a, ‘Hybrid epigenomes reveal extensive local genetic changes to chromatin accessibility contribute to divergence in embryonic gene expression between species’, Molecular Biology and Evolution, vol. 40, Oxford University Press, no. 11. 10.1101/2023.01.04.522781
Doane, MP, Ostrowski, M, Brown, MV, Bramucci, AR, Levente Bodrossy, Van, J, Bissett, A, Steinberg, PD, Doblin, MA & Seymour, JR 2023, ‘Defining marine bacterioplankton community assembly rules by contrasting the importance of environmental determinants and biotic interactions’, Environmental Microbiology, vol. 25, Wiley-Blackwell, no. 6, pp. 1084–1098. 10.1111/1462-2920.16341
Dwyer, RG, Rathbone, M, Foote, D, Bennett, MB, Butcher, PA, Otway, NM, Louden, BM, Fabrice R. A. Jaine, Franklin, CE & Kilpatrick, C 2023, ‘Marine reserve use by a migratory coastal shark, Carcharias taurus’, Biological Conservation, vol. 283, Elsevier BV, pp. 110099–110099. https://doi.org/10.1016/j.biocon.2023.110099
Dylan, Walsh, CT, Ivars Reinfelds, Payne, NL, Ives, MC, Roberts, DG, Craig, JR, Gray, CA & Taylor, MD 2023, ‘Estuarine movements in a sparid hybrid complex’, Marine and Freshwater Research, vol. 74, CSIRO Publishing, no. 7, pp. 625–640. https://doi.org/10.1071/MF22189
Eger, AM, Marzinelli, EM, Beas-Luna, R, Blain, CO, Blamey, LK, Byrnes, JEK, Carnell, PE, Choi, CG, Hessing-Lewis, M, Kim, KY, Kumagai, NH, Lorda, J, Moore, P, Nakamura, Y, Pérez-Matus, A, Pontier, O, Smale, D, Steinberg, PD & Vergés, A 2023a, ‘The value of ecosystem services in global marine kelp forests’, Nature Communications, vol. 14, no. 1, p. 1894. https://doi.org/10.1038/s41467-023-37385-0
Erickson, KR, Bugnot, AB & Figueira, WF 2023, ‘Optimising sampling of fish assemblages on intertidal reefs using remote underwater video’, PeerJ, vol. 11, p. e15426, https://doi.org/10.7717/peerj.15426
Ferretto, G, Vergés, A, Poore, AGB, Glasby, TM & Griffin, KJ 2023, ‘Habitat Provision and Erosion Are Influenced by Seagrass Meadow Complexity: A Seascape Perspective’, Diversity, vol. 15, no. 2, p. 125. https://doi.org/10.3390/d15020125
Filippini, G, Bugnot, AB, Ferguson, A, Gribben, PE, Palmer, JK, Erickson, K & Dafforn, KA 2023a, ‘The influence of oyster reefs and surrounding sediments on nitrogen removal – An in-situ study along the East coast of Australia’, Environmental Research, vol. 237, Elsevier BV, no. Pt 1, pp. 116947–116947. 10.1016/j.envres.2023.116947
Filippini, G, Bugnot, AB, Varkey, D, Nachshon Siboni, Ferguson, A, Gribben, PE, Erickson, K, Palmer, JK & Dafforn, KA 2023b, ‘Nitrogen-cycling genes in oyster reefs and surrounding sediments: Relationships with environmental factors and respective nitrogen rates’, Marine Pollution Bulletin, vol. 197, Elsevier BV, pp. 115710–115710. https://doi.org/10.1016/j.marpolbul.2023.115710
Firme, GF, Hughes, D, Laiolo, L, Roughan, M, Suthers, IM & Doblin, MA 2023, ‘Contrasting phytoplankton composition and primary productivity in multiple mesoscale eddies along the East Australian coast’, Deep Sea Research Part I: Oceanographic Research Papers, vol. 193, Elsevier BV, pp. 103952–103952. https://doi.org/10.1016/j.dsr.2022.103952
Firth, LB 2023, ‘Full-scale living seawall trial creates a space for nature along the Plymouth coastline, UK’, Proceedings of the Institution of Civil Engineers, vol. 176, ICE Publishing, no. 4, pp. 149–149.
Floriaan Devloo‐Delva, Burridge, CP, Kyne, PM, Brunnschweiler, JM, Chapman, DD, Charvet, P, Chen, X, Cliff, G, Daly, R, J. Marcus Drymon, Espinoza, M, Fernando, D, Laura García Barcia, Kerstin, González-Garza, BI, Grant, MI, Gunasekera, RM, Sebastián Hernández, Susumu Hyodo & Jabado, RW 2023, ‘From rivers to ocean basins: The role of ocean barriers and philopatry in the genetic structuring of a cosmopolitan coastal predator’, Ecology and Evolution, vol. 13, Wiley, no. 2. https://doi.org/10.1002/ece3.9837
Fowler, AM, Dowling, N, Lyle, J, Josep Alós, Anderson, L, Cooke, SJ, Danylchuk, AJ, Keno Ferter, Folpp, H, Hutt, CP, Hyder, K, Lew, DK, Lowry, MB, Lynch, TP, Meadows, N, Estanis Mugerza, Kjell Harald Nedreaas, Domingos Garrone‐Neto, Ochwada‐Doyle, FA & Potts, WM 2023, ‘Toward sustainable harvest strategies for marine fisheries that include recreational fishing’, Fish and Fisheries, vol. 24, Wiley-Blackwell, no. 6, pp. 1003–1019. https://doi.org/10.1111/faf.12781
Fuggle, RE, Gribben, PE & Marzinelli, EM 2023, ‘Experimental evidence root‐associated microbes mediate seagrass response to environmental stress’, Journal of Ecology, vol. 111, Wiley-Blackwell, no. 5, pp. 1079–1093. https://doi.org/10.1111/1365-2745.14081
Giulia Ferretto, Glasby, TM, Poore, B, Callaghan, CT, Sinclair, EA, Statton, J, Kendrick, GA & Vergés, A 2023, ‘Optimizing the restoration of the threatened seagrass Posidonia australis: plant traits influence restoration success’, Restoration Ecology, vol. 31, Wiley-Blackwell, no. 5. https://doi.org/10.1111/rec.13893
Gunton, H, Fowler, AM, Miller, ME, Booth, DJ & Stewart, J 2023, ‘The utility of otolith-based methods for discriminating stock structure of the fishery important monacanthid, Nelusetta ayraud, over an intermediate scale’, The utility of otolith-based methods for discriminating stock structure of the fishery important monacanthid, Nelusetta ayraud, over an intermediate scale, vol. 264, pp. 106715–106715. https://doi.org/10.1016/j.fishres.2023.106715
Hewitt, DE, Johnson, DD, Suthers, IM & Taylor, MD 2023a, ‘Crabs ride the tide: incoming tides promote foraging of Giant Mud Crab (Scylla serrata)’, Crabs ride the tide: incoming tides promote foraging of Giant Mud Crab (Scylla serrata), vol. 11, no. 1. https://doi.org/10.1186/s40462-023-00384-3
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Holbach, HM, Bousquet, O, Bucci, L, Chang, P, Cione, JJ, Ditchek, SD, Doyle, J, Duvel, J-P, Elston, J, Gõni, G, Hon, KK, Ito, K, Zorana Jelenak, Lei, X, Lumpkin, R, McMahon, CR, Reason, C, Sanabia, ER, Shay, LK & Sippel, JA 2023, ‘Recent advancements in aircraft and in situ observations of tropical cyclones’, Tropical Cyclone Research and Review, vol. 12, KeAi, no. 2, pp. 81–99. https://doi.org/10.1016/j.tcrr.2023.06.001
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Jonsen, ID, W. James Grecian, Phillips, LR, Carroll, G, McMahon, CR, Harcourt, R, Hindell, MA & Patterson, TA 2023, ‘aniMotum, an R package for animal movement data: Rapid quality control, behavioural estimation and simulation’, Methods in Ecology and Evolution, vol. 14, Wiley-Blackwell, no. 3, pp. 806–816. https://doi.org/10.1111/2041-210X.14060
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Klanten, OS, Gall, M, Barbosa, SS, Hart, MW, Keever, CC, Puritz, JB, Januar Harantio, Toonen, RJ, Selvakumaraswamy, P, Grosberg, RK & Byrne, M 2023, ‘Population connectivity across east Australia’s bioregions and larval duration of the range‐extending sea star Meridiastra calcar’, Aquatic Conservation-marine and Freshwater Ecosystems, Wiley-Blackwell. https://doi.org/10.1002/aqc.3973
Lilly, LE, Suthers, IM, Everett, JD & Richardson, AJ 2023, ‘A global review of pyrosomes: Shedding light on the ocean’s elusive gelatinous “fire‐bodies”’, Limnology and oceanography letters, vol. 8, Wiley, no. 6, pp. 812–829. https://doi.org/10.1002/lol2.10350
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Maslen, B, Gordana Popović, Lim, M, Marzinelli, EM & Warton, DI 2023, ‘How many sites? Methods to assist design decisions when collecting multivariate data in ecology’, Methods in Ecology and Evolution, vol. 14, Wiley-Blackwell, no. 6, pp. 1564–1573. https://doi.org/10.1111/2041-210X.14094
Mayer‐Pinto, M, Bugnot, AB, Johnston, EL, Potts, J, Airoldi, L, Glasby, TM, Elisabeth, Scanes, P, Shinjiro Ushiama & Dafforn, KA 2023, ‘Physical and biogenic complexity mediates ecosystem functions in urban sessile marine communities’, Journal of Applied Ecology, vol. 60, Wiley-Blackwell, no. 3, pp. 480–493. https://doi.org/10.1111/1365-2664.14347
McMahon, CR, Hindell, MA, Charrassin, JB, Coleman, R, Guinet, C, Harcourt, R, Labrousse, S, Raymond, B, Sumner, M & Ribeiro, N 2023, ‘Southern Ocean pinnipeds provide bathymetric insights on the East Antarctic continental shelf’, Communications Earth & Environment, vol. 4, no. 1, pp. 1–10, https://doi.org/10.1038/s43247-023-00928-w
Mitchell, A, Hayes, C, Booth, DJ & Nagelkerken, I 2023a, ‘Future shock: Ocean acidification and seasonal water temperatures alter the physiology of competing temperate and coral reef fishes’, Science of The Total Environment, vol. 883, p. 163684. https://doi.org/10.1016/j.scitotenv.2023.163684
Mitchell, A, Hayes, C, Booth, DJ & Nagelkerken, I 2023b, ‘Projected ocean acidification and seasonal temperature alter the behaviour and growth of a range extending tropical fish’, Coral Reefs, vol. 42, Springer Science+Business Media, no. 4, pp. 919–929. https://doi.org/10.1007/s00338-023-02396-2
O’Connell, MJ, Fowler, AM, Allan, SJ, Beretta, GA & Booth, DJ 2023, ‘Subtropical coral expansion into SE Australia: a haven for both temperate and expatriating tropical reef fishes’, Coral Reefs, Springer Science+Business Media. https://doi.org/10.1007/s00338-023-02429-w
Ochwada‐Doyle, FA, Hughes, JM, Fowler, AM, Murphy, JJ, Stark, K, Lowry, MB, West, L & Taylor, MD 2023a, ‘Quantifying the potential impact of reducing recreational harvest limits on the catch of a key marine species using off-site angler survey data’, Ices Journal of Marine Science, vol. 80, Oxford University Press, no. 2, pp. 295–307. https://doi.org/10.1093/icesjms/fsac232
Ochwada‐Doyle, FA, Miles, NG, Hughes, JM, Murphy, JJ, Stark, K, Lowry, MB, West, L & Taylor, MD 2023b, ‘Interannual variation in a freshwater recreational fishery under the influence of drought, bushfires, floods and a global pandemic’, Marine and Freshwater Research, vol. 74, CSIRO Publishing, no. 12, pp. 1102–1112. https://doi.org/10.1071/MF22142
Pitt, KA, Lawley, JW, Hinchliffe, C, Matis, PA, Olguín-Jacobson, C, Nur Arafeh‐Dalmau, Lindholm, P, Arnold, JM & Suthers, IM 2023, ‘Assemblages of pelagic thaliaceans in oceanographic features at the tropical-temperate transition zone of a western boundary current’, Journal of Plankton Research, vol. 45, Oxford University Press, no. 4, pp. 677–692. https://doi.org/10.1093/plankt/fbad024
Rendy Ruvindy, Barua, A, Christopher, Chowdhury Sarowar, Savela, H & Murray, SA 2023, ‘Genomic copy number variability at the genus, species and population levels impacts in situ ecological analyses of dinoflagellates and harmful algal blooms’, ISME Communications, vol. 3, Springer Nature, no. 1. https://doi.org/10.1038/s43705-023-00274-0
Ribeiro, N, Herráiz‐Borreguero, L, Rintoul, SR, Williams, GD, McMahon, CR, Hindell, MA & Christophe Guinet 2023, ‘Oceanic Regime Shift to a Warmer Continental Shelf Adjacent to the Shackleton Ice Shelf, East Antarctica’, Journal of Geophysical Research: Oceans, vol. 128, Wiley-Blackwell, no. 11. https://doi.org/10.1029/2023JC019882
Rigg, AL, Bellotto, C, Fowler, AM & Booth, DJ 2023, ‘Staining protocols affect use of otolith to estimate demography of damselfish sergeant major (Abudefduf vaigiensis)’, Journal of Fish Biology, Wiley-Blackwell. https://doi.org/10.1111/jfb.15601
Riley, IJ, DiBattista, JD, Stewart, J, Schilling, HT & Suthers, IM 2023, ‘Using integrative taxonomy to distinguish cryptic halfbeak species and interpret distribution patterns, fisheries landings, and speciation’, Marine and Freshwater Research, vol. 74, CSIRO Publishing, no. 2, pp. 125–143. https://doi.org/10.1071/MF22048
Rose, Goetz, KT, Pinkerton, MH, Iwata, T, Holser, RR, Michael, S, Pritchard, C, Childerhouse, S, Rotella, JJ, Federwisch, L, Costa, DP & LaRue, MA 2023, ‘First observations of Weddell seals foraging in sponges in Erebus Bay, Antarctica’, Polar Biology, vol. 46, Springer Science+Business Media, no. 7, pp. 611–621. https://doi.org/10.1007/s00300-023-03149-1
Rourke, ML, Broadhurst, MK, Fowler, AM, Wilkes Walburn, J, Hughes, JM, Fielder, DS, DiBattista, JD & Furlan, EM 2023a, ‘Investigating the Potential Utility of Environmental DNA to Provide a Relative Abundance Index for the Depleted Teleost, Mulloway, Argyrosomus japonicus’, Diversity, vol. 15, no. 3, p. 322, https://doi.org/10.3390/d15030322
Rourke, ML, Walburn, JW, Broadhurst, MK, Fowler, AM, Hughes, JM, Fielder, DS, DiBattista, JD & Furlan, EM 2023b, ‘Poor utility of environmental DNA for estimating the biomass of a threatened freshwater teleost; but clear direction for future candidate assessments’, Fisheries Research, vol. 258, p. 106545. https://doi.org/10.1016/j.fishres.2022.106545
Scanes, E, Nachshon Siboni, Rees, B & Seymour, JR 2023, ‘Acclimation in intertidal animals reduces potential pathogen load and increases survival following a heatwave’, iScience, vol. 26, Cell Press, no. 6, pp. 106813–106813. https://doi.org/10.1016/j.isci.2023.106813
Schaefer, N, Mayer-Pinto, M, Johnston, EL & Dafforn, KA 2023a, ‘Understanding the role of microhabitats in intertidal rock pools to guide future eco-engineering designs’, Marine Biology, vol. 170, no. 4. https://doi.org/10.1007/s00227-023-04196-2
Schaefer, N, Sedano, F, Bishop, MM, Dunn, K, M. Hank Haeusler, Kuai Daniel Yu, Yannis Zavoleas & Dafforn, KA 2023b, ‘Facilitation of non-indigenous ascidian by marine eco-engineering interventions at an urban site’, Biofouling, vol. 39, Taylor & Francis, no. 1, pp. 80–93. https://doi.org/10.1080/08927014.2023.2186785
Schilling, HT, Dedden, AV, Crocetti, S, Liggins, G, Lorigan, S, Marshall, A, Rogers, TL, Schaeffer, A, Suthers, IM & Johnson, DD 2023a, ‘Regional oceanography affects humpback whale entanglements in set fishing gear’, Conservation science and practice, vol. 5, Society for Conservation Biology, no. 11. https://doi.org/10.1111/csp2.13034
Schilling, HT, Everett, JD, Schaeffer, A, Hinchliffe, C, Yates, P, Baird, ME & Suthers, IM 2023b, ‘Vertically Resolved Pelagic Particle Biomass and Size Structure Across a Continental Shelf Under the Influence of a Western Boundary Current’, Journal of Geophysical Research: Oceans, vol. 128, Wiley-Blackwell, no. 2. https://doi.org/10.1029/2022JC018689
Schilling, HT, Johnson, DD, Roshan Hanamseth, Suthers, IM & Taylor, MD 2023c, ‘Long-term drivers of catch variability in south-eastern Australia’s largest portunid fishery’, Fisheries Research, vol. 260, Elsevier BV, pp. 106582–106582. https://doi.org/10.1016/j.fishres.2022.106582
Schilling, HT, Stewart, J, Litherland, L, Smith, JA, Everett, JD, Hughes, JM & Suthers, IM 2023d, ‘Age and growth of Pomatomus saltatrix in the south-western Pacific Ocean (eastern Australia), with a global comparison’, Marine and Freshwater Research, vol. 74, no. 6. https://doi.org/10.1071/MF22216
Sebastian Vadillo Gonzalez, Dafforn, KA, Gribben, PE, O’Connor, WA & Johnston, EL 2023a, ‘Organic enrichment reduces sediment bacterial and archaeal diversity, composition, and functional profile independent of bioturbator activity’, Marine Pollution Bulletin, vol. 196, Elsevier BV, pp. 115608–115608. 10.1016/j.marpolbul.2023.115608
Sebastian Vadillo Gonzalez, Sofie Vranken, Coleman, MA, Wernberg, T, Steinberg, PD & Marzinelli, EM 2023b, ‘Host genotype and microbiome associations in co‐occurring clonal and non‐clonal kelp, Ecklonia radiata’, Molecular Ecology, vol. 32, Wiley-Blackwell, no. 16, pp. 4584–4598. https://doi.org/10.1111/mec.17056
Smoothey, AF, Niella, Y, Brand, C, Peddemors, VM & Butcher, PA 2023, ‘Bull Shark (Carcharhinus leucas) Occurrence along Beaches of South-Eastern Australia: Understanding Where, When and Why’, Biology, vol. 12, no. 9, p. 1189, https://doi.org/10.3390/biology12091189
Stelling-Wood, TP, Gribben, PE, Birch, GF, Bishop, MJ, Blount, C, Booth, DJ, Brown, C, Bruce, E, Bugnot, AB, Byrne, M, Creese, RG, Dafforn, KA, Dahlenburg, J, Doblin, MA, Fellowes, T, Fowler, AM, Gibbs, M, Glamore, W, Glasby, TM & Hay, AC 2023, ‘A deep dive into the ecology of Gamay (Botany Bay, Australia): current knowledge and future priorities for this highly modified coastal waterway’, Marine and Freshwater Research, vol. 74, CSIRO Publishing, no. 12, pp. 1003–1025. https://doi.org/10.1071/MF22268
Suthers, IM, Schaeffer, A, Archer, M, Roughan, M, Griffin, DA, Chapman, C, Sloyan, BM & Everett, JD 2023, ‘Frontal eddies provide an oceanographic triad for favorable larval fish habitat’, Limnology and Oceanography, vol. 68, Wiley-Blackwell, no. 5, pp. 1019–1036. https://doi.org/10.1002/lno.12326
Volzke, S, Cleeland, JB, Hindell, MA, Corney, SP, Wotherspoon, SJ & McMahon, CR 2023, ‘Extreme polygyny results in intersex differences in age-dependent survival of a highly dimorphic marine mammal’, Royal Society Open Science, vol. 10, no. 3. https://doi.org/10.1098/rsos.221635

2022

Allegue, H., Guinet, C., Patrick, S. C., Hindell, M. A., McMahon, C. R., Réale, D. 2022. “Sex, Body Size, and Boldness Shape the Seasonal Foraging Habitat Selection in Southern Elephant Seals.” Ecology and Evolution 12, no. 1. https://doi.org/10.1002/ece3.8457.
Arce, F., Hindell, M. A., McMahon, C. R., Wotherspoon, S. J., Guinet, C., Harcourt, R. G., Bestley, S.. 2022. “Elephant Seal Foraging Success Is Enhanced in Antarctic Coastal Polynyas.” Proceedings of the Royal Society B: Biological Sciences 289, no. 1967. https://doi.org/10.1098/rspb.2021.2452.
Appleyard, S. A., Maher, S, Miskiewicz, A. G., Lara-Lopez, A., Matis, P., Fielder, D. S., Suthers, I. M.. 2022. “Genetic and Morphological Identification of Formalin Fixed, Preserved Larval Fishes; Can We Have the Best of Both Worlds?” Journal of Experimental Marine Biology and Ecology 553, no. 151763. https://doi.org/10.1016/j.jembe.2022.151763.
Andrzejaczek, S., Lucas, T. C. D., Goodman, M. C., Hussey, N E., Armstrong, A J., Carlisle, A., Coffey, D. M., et al. 2022. “Diving into the Vertical Dimension of Elasmobranch Movement Ecology.” Science Advances 8, no. 33. https://doi.org/10.1126/sciadv.abo1754.
Beltran, R. S., Hindell, M. A., McMahon, C. R.. 2022. “The Elephant Seal: Linking Phenotypic Variation with Behavior and Fitness in a Sexually Dimorphic Phocid.” Springer EBooks, January, 401–40. https://doi.org/10.1007/978-3-030-88923-4_11.
Bishop, M. J., Vozzo, M. L., Mayer-Pinto, M., Dafforn, K. A.. 2022. “Complexity–Biodiversity Relationships on Marine Urban Structures: Reintroducing Habitat Heterogeneity through Eco-Engineering.” Philosophical Transactions of the Royal Society B: Biological Sciences 377, no. 1857. https://doi.org/10.1098/rstb.2021.0393.
Bosch, N. E, McLean, M, Zarco-Perello, S., Bennett,, S. Stuart-Smith, R. D., Vergés, A., Pessarrodona, A., et al. 2022. “Persistent Thermally Driven Shift in the Functional Trait Structure of Herbivorous Fishes: Evidence of Top‐down Control on the Rebound Potential of Temperate Seaweed Forests?” Global Change Biology 28, no. 7: 2296–2311. https://doi.org/10.1111/gcb.16070.
Buenafe, K. C. V., Everett, J. D., Dunn, D. C., Mercer, J., Suthers, I M., Schilling, H. T., Hinchliffe, C., Dabalà, A., Richardson, A. J. 2022. “A Global, Historical Database of Tuna, Billfish, and Saury Larval Distributions.” Scientific Data 9, no. 1. https://doi.org/10.1038/s41597-022-01528-7.
Bugnot, A. B., Dafforn, K. A., Coleman, R. A., Ramsdale, M., GibbesonJ. T., Erickson, K., Vila‐Concejo, A., Figueira, W. F., Gribben, P. E.. 2022. “Linking Habitat Interactions and Biodiversity within Seascapes.” Ecosphere 13, no. 4. https://doi.org/10.1002/ecs2.4021.
Bugnot, A. B., Gribben, P. E., O’Connor, W. A., Erickson, K., Coleman, R. A., Dafforn, K. A. 2022. “Below‐Ground Ecosystem Engineers Enhance Biodiversity and Function in a Polluted Ecosystem.” Journal of Applied Ecology 59, no. 8, 2094–2105. https://doi.org/10.1111/1365-2664.14221.
Byers, J.E, Blaze, J. A., Dodd, A. C., Hall, H., Gribben, P. E.. 2022. “Exotic Asphyxiation: Interactions between Invasive Species and Hypoxia.” Biological Reviews 98, no. 1, 150–67. https://doi.org/10.1111/brv.12900.
Byrne, M.,. Gall, M. L., Campbell, H., Lamare, M. D., Holmes, S. P.. 2022. “Staying in Place and Moving in Space: Contrasting Larval Thermal Sensitivity Explains Distributional Changes of Sympatric Sea Urchin Species to Habitat Warming.” Global Change Biology 28, no. 9, 3040–53. https://doi.org/10.1111/gcb.16116.
Chan, A. J., Raoult, V., Jaine, F. R. A., Peddemors, V. M., Broadhurst, M. K., Williamson, J. E. 2022. “Trophic Niche of Australian Cownose Rays ( Rhinoptera Neglecta ) and Whitespotted Eagle Rays ( Aetobatus Ocellatus ) along the East Coast of Australia.” Journal of Fish Biology 100, no. 4, 970–78. https://doi.org/10.1111/jfb.15028.
Chua, M., Ho, S. Y. W., McMahon, C. R., Jonsen, I. D., de Bruynm M. 2022. “Movements of Southern Elephant Seals (Mirounga Leonina) from Davis Base, Antarctica: Combining Population Genetics and Tracking Data.” Polar Biology 45, no. 7, 1163–74. https://doi.org/10.1007/s00300-022-03058-9.
Coghlan, A. R., Blanchard, J. L., Heather, F. J., Stuart‐Smith, R. D., Edgar, G. J., Audzijonyte, A.. 2022. “Community Size Structure Varies with Predator–Prey Size Relationships and Temperature across Australian Reefs.” Ecology and Evolution 12, no. 4. https://doi.org/10.1002/ece3.8789.
Currie, J., Schilling, H. T., Evans, L., Boyce, T., Lester, N., Greene, G., Little, K., et al. 2022. “Contribution of Avoidable Mortality to Life Expectancy Inequalities in Wales: A Decomposition by Age and by Cause between 2002 and 2020.” Journal of Public Health, no. fdac133. https://doi.org/10.1093/pubmed/fdac133.
Davidson, P. L, Byrne, M., Wray, G. A.. 2022. “Evolutionary Changes in the Chromatin Landscape Contribute to Reorganization of a Developmental Gene Network during Rapid Life History Evolution in Sea Urchins.” Edited by Patricia Wittkopp. Molecular Biology and Evolution 39, no. 9. https://doi.org/10.1093/molbev/msac172.
Davidson, P. L., Guo, H., Swart, J. S., Massri, A. J., Edgar, A., Wang, L., Berrio, A., et al. 2022. “Recent Reconfiguration of an Ancient Developmental Gene Regulatory Network in Heliocidaris Sea Urchins.” Nature Ecology and Evolution 6, no. 12, 1907–20. https://doi.org/10.1038/s41559-022-01906-9.
DiBattista, J. D., Ambrose, L. K., Buston, P. M., Hobbs, J. A., Moore, B. R., Pope, L. C., Westneat, M. W., et al. 2022. “Social Domination and Environmental Constraint Jointly Dictate Resource Use in a Highly Social Coral Reef Fish.” Ecology and Evolution 12, no. 10. https://doi.org/10.1002/ece3.11020.
Doane, M. P, Ostrowski, M., Brown, M. V., Bramucci, A. R., Bodrossy, L., Van de Kamp, J., Bissett, A., Steinberg, P. D., Doblin, M. A., Seymour, J. R.. 2022. “Defining Marine Bacterioplankton Community Assembly Rules by Contrasting the Importance of Environmental Determinants and Biotic Interactions.” BioRxiv. https://doi.org/10.1101/2022.05.02.490371.
Dodds, K. C., Schaefer, N., Bishop, M. J., Nakagawa, S., Brooks, P. R., Knights, A. M., Strain, E. M. A.. 2022. “Material Type Influences the Abundance but Not Richness of Colonising Organisms on Marine Structures.” Journal of Environmental Management 307, no. 114549. https://doi.org/10.1016/j.jenvman.2022.114549.
Dowling, N., Wilson, J. R., Cope, J. M., Dougherty, D., Lomonico, S., Revenga, C., Snouffer, B. J., et al. 2022. “The FishPath Approach for Fisheries Management in a Data‐ and Capacity‐Limited World.” Fish and Fisheries 24, no. 2, 212–30. https://doi.org/10.1111/faf.12721.
Eger, A. M., Eddy, N., Gleason, M., Layton, C., McHugh, T. A., Steinberg, P., Vergés, A. 2022. “The Kelp Forest Alliance: A Global Community of Practice to Understand, Advise, and Motivate Kelp Forest Conservation and Restoration.” Limnology and Oceanography Bulletin 31, no. 4. https://doi.org/10.1002/lob.10528.
Eger, A. M., Marzinelli, E. M., Christie, H., Fagerli, C. W., Fujita, D., Gonzalez, A. P., Hong, S. W., et al. 2022. “Global Kelp Forest Restoration: Past Lessons, Present Status, and Future Directions.” Biological Reviews 97, no. 4. https://doi.org/10.1111/brv.12850.
Esquivel‐Muelbert, J. R., Lanham, B. S., Martínez‐Baena, F., Dafforn, K. A., Gribben, P. E., Bishop, M. J. 2022. “Spatial Variation in the Biotic and Abiotic Filters of Oyster Recruitment: Implications for Restoration.” Journal of Applied Ecology 59, no. 4 953–64 https://doi.org/10.1111/1365-2664.14107.
Ferretto, G., Vergés, A., Poore, A. G. B., Gribben, P. E., Glasby, T. M.. 2022. “Floating Bags Have the Potential to Minimise Oyster Farming Impacts on Posidonia Australis Seagrass Meadows.” Aquaculture 560, no. 738594. https://doi.org/10.1016/j.aquaculture.2022.738594.
Filippini, G., Dafforn, K. A., Bugnot, A. B. 2023. “Shellfish as a Bioremediation Tool: A Review and Meta-Analysis.” Environmental Pollution 316, no. 120614. https://doi.org/10.1016/j.envpol.2022.120614.
Fowler, A. M., Ochwada-Doyle, F. A., Dowling, N. A., Folpp, H., Hughes, J. M., Lowry, M. B., Lyle, J. M., Lynch, T. P., Miles, M. G., Chick, R. C.. 2022. “Integrating Recreational Fishing into Harvest Strategies: Linking Data with Objectives”. ICES Journal of Marine Science 79, no. 2. https://doi.org/10.1093/icesjms/fsab270.
Fu, F., Tschitschko, B., Hutchins, D. A., Larsson, M. E., Baker, K. G, McInnes, A., Kahlke, T., Verma, A., Murray, S. A., Doblin, M. A.. 2022. “Temperature Variability Interacts with Mean Temperature to Influence the Predictability of Microbial Phenotypes.” Global Change Biology 28, no. 19, 5741–54. https://doi.org/10.1111/gcb.16330.
Garcia, V., Schilling, H. T., Cruz, D. O., Hawes, S. M., Everett, J. D., Roughan, M., Miskiewicz, A. G., Pakhomov, E. A., Jeffs, A., Suthers, I. M.. 2022. “Entrainment and Development of Larval Fish Assemblages in Two Contrasting Cold Core Eddies of the East Australian Current System.” Marine Ecology Progress Series 685, no. March, 1–18. https://doi.org/10.3354/meps13982.
Garner, N., Ross, P. M., Falkenberg, L. J., Seymour, J. R., Siboni, N., Scanes, E.. 2022. “Can Seagrass Modify the Effects of Ocean Acidification on Oysters?” Marine Pollution Bulletin 177, no. 113438. https://doi.org/10.1016/j.marpolbul.2022.113438.
Gavel, I., Byrne, M., Thomson, M.. 2022. “Effects of Raised Temperature on Viviparous Reproduction in the Marine Isopod Cirolana Harfordi.” Journal of Experimental Marine Biology and Ecology 546, no. 151648. https://doi.org/10.1016/j.jembe.2021.151648.
Geraldi, N. R., Vozzo, M. L., Fegley, S. R., Anton, A., Peterson, C. H.. 2022. “Oyster Abundance on Subtidal Reefs Depends on Predation, Location, and Experimental Duration.” Ecosphere 13, no. 6. https://doi.org/10.1002/ecs2.4087.
Gill, R. L, Collins, S., Argyle, P., Larsson, M. E., Fleck, R., Doblin, M. A.. 2022. “Predictability of Thermal Fluctuations Influences Functional Traits of a Cosmopolitan Marine Diatom.” Proceedings of the Royal Society B: Biological Sciences 289, no. 1973. https://doi.org/10.1098/rspb.2021.2581.
Goddard, B. K., Becker, A., Harasti, D., Smith, J. A., Subramaniam, R. C., Suthers, I. M.. 2022. “The Trophic Basis of Fish Assemblages in Temperate Estuarine and Coastal Ecosystems.” Marine Biology 169, no. 2. https://doi.org/10.1007/s00227-021-04001-y.
Goodman, K. Z, Niella, Y., Bliss-Henaghan, T., Harcourt, R., Smoothey, A. F., Peddemors, V. M.. 2022. “Ontogenetic Changes in the Tooth Morphology of Bull Sharks ( Carcharhinus Leucas ).” Journal of Fish Biology 101, no. 4, 1033–46. https://doi.org/10.1111/jfb.15170.
Grainger, R., Raoult, V., Peddemors, V. M., Machovsky‐Capuska, G. M., Gaston, T. F., Raubenheimer, D. 2022. “Integrating Isotopic and Nutritional Niches Reveals Multiple Dimensions of Individual Diet Specialisation in a Marine Apex Predator.” Journal of Animal Ecology 92, no. 2, 514–34. https://doi.org/10.1111/1365-2656.13852.
Gray, C. A. 2022. “Historic, Pre-Stock Enhancement, Demographic Conditions of Exploited Populations of Dusky Flathead, Platycephalus Fuscus, in Eastern Australia.” Aquaculture and Fisheries, September. https://doi.org/10.1016/j.aaf.2022.07.001.
Gray, C. A 2022. “Variation in Growth, Length and Age Characteristics of Estuarine Acanthopagrus (Sparidae) Populations in New South Wales, Australia.” Regional Studies in Marine Science 55, no. 102481. https://doi.org/10.1016/j.rsma.2022.102481.
Gray, C. A., Chapman, M. G., Underwood, A. J., Rotherham, D.. 2022. “Spatial Management of Estuarine Fisheries Resources: Do Recreational-Only Fished Estuaries Provide Conservation to Harvested Species?” Reviews in Fish Biology and Fisheries 32, no. 4, 1123–40. https://doi.org/10.1007/s11160-022-09723-w.
Guillemin, T. A., Pepperell, J. G., Gaston, T., Williamson, J. E.. 2022.“Deciphering the Trophic Ecology of Three Marlin Species Using Stable Isotope Analysis in Temperate Waters off Southeastern Australia.” Frontiers in Marine Science 9, no. 795436. https://doi.org/10.3389/fmars.2022.795436.
Hanamseth, R., Hewitt, D. E., Johnson, D. J., Suthers, I. M., Taylor, M. D.. 2022. “An Automated Image Analysis System for Estimating Fecundity in Portunid Crabs.” Fisheries Research 245, no. 106140. https://doi.org/10.1016/j.fishres.2021.106140.
Hanamseth, R., Johnson, D. D., Schilling, H. T, Suthers, I. M., Taylor, M. D. 2022. “Evaluation of a Novel Research Trap for Surveys of Blue Swimmer Crab Populations.” Marine and Freshwater Research 73, no. 6, 812–22. https://doi.org/10.1071/mf21005.
Hewitt, D. E, Niella, Y., Johnson, D. D., Suthers, I. M., Taylor, M. D. 2022. “Crabs Go with the Flow: Declining Conductivity and Cooler Temperatures Trigger Spawning Migrations for Female Giant Mud Crabs (Scylla Serrata) in Subtropical Estuaries.” Estuaries and Coasts 45, no. 7, 2166–80. https://doi.org/10.1007/s12237-022-01061-1
Hewitt, D. E., Schilling, H. T., Hanamseth, R., Everett, J. D., Li, J., Roughan, M., Johnson, D. D., Suthers, I. M., Taylor, M. D.. 2022. “Mesoscale Oceanographic Features Drive Divergent Patterns in Connectivity for Co‐Occurring Estuarine Portunid Crabs.” Fisheries Oceanography 31, no. 6, 587–600. https://doi.org/10.1111/fog.12608.
Heinrich, D.D.U., Huveneers, C., Houslay, T. M., Dhellemmes, F., Brown, C.. 2022. “Shark Habituation to a Food-Related Olfactory Cue.” Animal Behaviour 187, no. May, 147–65. https://doi.org/10.1016/j.anbehav.2022.03.003.
Hinchliffe, C., Matis, P. A., Schilling, H. T., Everett, J. D., Miskiewicz, A. D., Pepin, P., Falster, D. S., Suthers, I. M.. 2022. “Plankton Size Spectra as an Indicator of Larval Success in Pacific Sardine (Sardinops Sagax).” Fisheries Oceanography 32, no. 2, 196–212. https://doi.org/10.1111/fog.12620.
Hindell, M. A, McMahon, C. R., Guinet, C., Harcourt, R., Jonsen, I. D., Raymond, B., Maschette, D. 2022. “Assessing the Potential for Resource Competition between the Kerguelen Plateau Fisheries and Southern Elephant Seals.” Frontiers in Marine Science 9, no. November. https://doi.org/10.3389/fmars.2022.1006120.
Hinners, J., Argyle, P., Walworth, N. G., Doblin, M. A., Levine, N. M., Collins., S. 2022. “Multitrait Diversification in Marine Diatoms in Constant and Warmed Environments.” BioRxiv, April. https://doi.org/10.1101/2022.04.08.487611.
Hughes, J. M., Meadows, N. M., Stewart, J., Booth, D. J., Fowler, A. M. 2022. “Movement Patterns of an Iconic Recreational Fish Species, Mulloway (Argyrosomus Japonicus), Revealed by Cooperative Citizen-Science Tagging Programs in Coastal Eastern Australia.” Fisheries Research 247, no. 106179. https://doi.org/10.1016/j.fishres.2021.106179.
Hughes, J. M., Johnson, D. D., Collins, D., Ochwada‐Doyle, F. A., Murphy, J. J.. 2022. “Factors Affecting Seabird Abundance and Interaction with the Nearshore ‘for Hire’ Recreational Charter Fishery in New South Wales, Australia.” Aquatic Conservation: Marine and Freshwater Ecosystems 32, no. 2: 385–99. https://doi.org/10.1002/aqc.3769.
Kienzle, M., Broadhurst, M. K. , Pletzer, A., Stewart, J. 2022. “Erratum to ‘a Bayesian Approach to Estimating Mortality Rates Using Hazard Functions: Application to an Australian Halfbeak, Hyporhamphus Australis Fishery’ [Fish. Res. 243 (2021) 10606].” Fisheries Research 245, no. 106137. https://doi.org/10.1016/j.fishres.2021.106137.
Larsson, M. E., Bramucci, A. R., Collins, S., Hallegraeff, G., Kahlke, T., Raina, J., Seymour, J. R., and Doblin, M. A. 2022. “Mucospheres Produced by a Mixotrophic Protist Impact Ocean Carbon Cycling.” Nature Communications 13, no. 1. https://doi.org/10.1038/s41467-022-28867-8.
Leong, R. C, Bugnot, A. B., Marzinelli, E. M., Figueira, W. F., Erickson, K., Poore, A. G. B., Gribben, P. E.. 2022. “Variation in the Density and Body Size of a Threatened Foundation Species across Multiple Spatial Scales.” Restoration Ecology 30, no. 8. https://doi.org/10.1111/rec.13670
Martin, C. L., Curley, B., Wolfenden, K., Green, M., N. A. Moltschaniwskyj. 2022. “The Social Dimension to the New South Wales Shark Management Strategy, 2015–2020, Australia: Lessons Learned.” Marine Policy 141, no. 105079. https://doi.org/10.1016/j.marpol.2022.105079.
Martinez, A. S., Dafforn K. A., Johnston, E. L., Filippini, G., Potts, J., Mayer-Pinto, M. 2022. “Variations in Benthic Fluxes of Sediments near Pier Pilings and Natural Rocky Reefs.” Marine Environmental Research 177, no. 105640 https://doi.org/10.1016/j.marenvres.2022.105640.
Maslen, B., Popovic, G., Vergés, A., Marzinelli, E. M., Warton, D. I. 2022. “How Many Sites? Methods to Assist Design Decisions When Collecting Multivariate Data in Ecology.” ArXiv (Cornell University), June. https://doi.org/10.48550/arxiv.2206.09524.
Mayer-Pinto, M., Jones, T. M., Swearer, S. E., Robert, K. A., Bolton, D., Aulsebrook, A. E., Dafforn, K. A., et al. 2022. “Light Pollution: A Landscape-Scale Issue Requiring Cross-Realm Consideration.” UCL Open Environment 4, no. January. https://doi.org/10.14324/111.444/ucloe.000036.
McHuron, E. A., Adamczak, S. K., Arnould, J., Ashe, E., Booth, C., Bowen, W. D., Christiansen, F., et al. 2022. “Key Questions in Marine Mammal Bioenergetics.” Conservation Physiology 10, no. 1. https://doi.org/10.1093/conphys/coac055.
McLaren, E. J., Byrne, M.. 2022. “The Effect of Ocean Acidification on the Escape Behaviour of the Sea Star Parvulastra Exigua to Its Sea Star Predator Meridiastra Calcar.” Journal of Experimental Marine Biology and Ecology 555, no. 151779. https://doi.org/10.1016/j.jembe.2022.151779.
Mifsud, J. C. O., Costa, V. A., Petrone, M. E., Marzinelli, E. M., Holmes, E. C., Harvey, E.. 2022. “Transcriptome Mining Extends the Host Range of the Flaviviridae to Non-Bilaterians.” Virus Evolution 9, no. 1. https://doi.org/10.1093/ve/veac124.
Nappi, J., Goncalves, P., Khan, T. M., Majzoub, M. E., Grobler, A. S., Marzinelli, E. M., Thomas, T., Egan, S.. 2022. “Differential Priority Effects Impact Taxonomy and Functionality of Host‐Associated Microbiomes.” Molecular Ecology, January. https://doi.org/10.1111/mec.16336.
Navarro‐Barranco, C., Gribben, P. E, Ledet, J. , Poore, A. G. B. 2022. “Habitat‐Complexity Regulates the Intensity of Facilitation along an Environmental Stress Gradient.” Oikos 2022, no. 4. https://doi.org/10.1111/oik.08818.
Nicolle, P., Hughes, J. M., Fowler, A. M., Schilling, H. T.. 2022. “Long-Term Increase in Growth of an Estuarine Predator, Mulloway Argyrosomus Japonicus, Predicted to Continue under Future Warming Scenarios.” Marine Ecology Progress Series 688, no. April, 1–17. https://doi.org/10.3354/meps14048.
Niella, Y., Raoult, V., Gaston, T., Goodman, K., Harcourt, R., Peddemors, V., Smoothey, A. F.. 2022. “Reliance of Young Sharks on Threatened Estuarine Habitats for Nutrition Implies Susceptibility to Climate Change.” Estuarine, Coastal and Shelf Science 268, no. 107790. https://doi.org/10.1016/j.ecss.2022.107790.
O’Connell, M. J., Fowler, A. M., Allan, S. J., Beretta, G. A., Booth, D. J.. 2022. “Recruiting a Long Way from Home: Domino Damselfish Dascyllus Trimaculatus Can Detect New Temperate Coral Habitat and Conspecifics.” Journal of Fish Biology 100, no. 6, 1548–52. https://doi.org/10.1111/jfb.15064.
Pessarrodona, A., Vergés, A. , Bosch, N. B., Bell, S., Smith, S., Sgarlatta, M. P., Wernberg, T. 2022. “Tropicalization Unlocks Novel Trophic Pathways and Enhances Secondary Productivity in Temperate Reefs.” Functional Ecology 36, no. 3, 659–73. https://doi.org/10.1111/1365-2435.13990.
Pine, C., Erickson, K., Gribben, P. E., Figueira, W. F.. 2022. “Observation of Juvenile Eastern Blue Groper (Achoerodus Viridis) on Remnant Oyster Reefs in New South Wales, Australia.” Ecology 103, no. 12. https://doi.org/10.1002/ecy.3824.
Portela, E., Rintoul, S. R., Herraiz-Borreguero, L., Roquet, F., Bestley, S., van Wijk, E., Tamura, T., et al. 2022. “Controls on Dense Shelf Water Formation in Four East Antarctic Polynyas.” Journal of Geophysical Research: Oceans 127, no. 12. https://doi.org/10.1029/2022jc018804.
Riley, M., Meaghe, P., Huveneers, C., Leto, J., Peddemors, V. M., Slip, D., West, J., Bradshaw, C. J. A.. 2022. “The Australian Shark-Incident Database for Quantifying Temporal and Spatial Patterns of Shark-Human Conflict.” Scientific Data 9, no. 1, 378. https://doi.org/10.1038/s41597-022-01453-9.
Rowe, C. E., Keable, S. J., Ahyong,, S. T., Figueira, W. F.. 2022. “Physiological Responses of the Upside-down Jellyfish, Cassiopea (Cnidaria: Scyphozoa: Cassiopeidae) to Temperature and Implications for Their Range Expansion along the East Coast of Australia.” Journal of Experimental Marine Biology and Ecology 554, no. 151765 https://doi.org/10.1016/j.jembe.2022.151765.
Schilling, H. T., Smith, J. A., Everett, J. D., Harrison, D. P., Suthers, I. M.. 2022. “Size-Selective Predation by Three Estuarine Zooplanktivorous Fish Species.” Edited by Daniel Roelke. Marine and Freshwater Research 73, no. 6, 823–32. https://doi.org/10.1071/mf21344.
Schilling, H.T., Riley, I. J., Puckeridge, A. C., Milne-Muller, A., Callaghan, C. T. 2022. “Economic Value of Regional Spearfishing Competitions.” Fisheries Research 250, no. 106289. https://doi.org/10.1016/j.fishres.2022.106289.
Schilling, H.T., Hewitt, D. E., Malan, N., Taylor, M. D., Johnson, D. D. 2022. “Cross-Jurisdictional Larval Supply Essential for Eastern Australian Spanner Crabs (.” Edited by Jill Chiu. Marine and Freshwater Research 73, no. 11, 1352–67. https://doi.org/10.1071/mf21348.
Setyawan, E., Erdmann, M. V., Mambrasar, R., Hasan, A. W., Sianipar, A. B., Constantine, R., Stevenson, B. C., Jaine, F. R. A. 2022. “Residency and Use of an Important Nursery Habitat, Raja Ampat’s Wayag Lagoon, by Juvenile Reef Manta Rays (Mobula Alfredi).” Frontiers in Marine Science 9, no. 815094. https://doi.org/10.3389/fmars.2022.815094.
Steinberg, R.K., Ainsworth, T. D., Moriarty, T., Bednarek, T., Dafforn, K. A., Johnston, E. L.. 2022. “Bleaching Susceptibility and Resistance of Octocorals and Anemones at the World’s Southern-Most Coral Reef.” Frontiers in Physiology 13, no. 804193. https://doi.org/10.3389/fphys.2022.804193.
Stewart, J., Craig, J. R., Clain, C., Hegarty, A., Meadows, N. M., Gould, A., Young, C.. 2022. “Using Their Heads – a Novel, Collaborative Approach between Industry and Scientists to Monitor a Commercial Mullet Fishery as a Result of COVID-19 Restrictions.” Fisheries Research 250, no. 106272. https://doi.org/10.1016/j.fishres.2022.106272.
Stewart, J., Fowler, A. M., Meadows, N. M., Johnson, D. D.. 2022. “Life-History Traits and Commercial Catch Composition of Chelidonichthys Kumu in South-Eastern Australia.” Regional Studies in Marine Science 56, no. 102720. https://doi.org/10.1016/j.rsma.2022.102720.
Szabo, E., Arundell, E. J., Farrell, H., Imlay, A., King, T., Shadbolt, C., Taylor, M. D.. 2022. “Responding to Incidents of Low-Level Chemical Contamination and Deliberate Contamination in Food.” Elsevier EBooks, January, 359–77. https://doi.org/10.1016/b978-0-12-816011-4.00010-0.
Tagliafico, A., Baker, P., Kelaher, B., Ellis, S., Harrison, D.. 2022. “The Effects of Shade and Light on Corals in the Context of Coral Bleaching and Shading Technologies.” Frontiers in Marine Science 9, no. 919382. https://doi.org/10.3389/fmars.2022.919382.
Tebbett, S. B, Sgarlatta, M. P., Pessarrodona, A., Vergés, A., Wernberg, T., Bellwood, D. R.. 2022. “How to Quantify Algal Turf Sediments and Particulates on Tropical and Temperate Reefs: An Overview.” Marine Environmental Research 179, no. 105673 https://doi.org/10.1016/j.marenvres.2022.105673.
Thomsen, M. S., Altieri, A. H., Angelini, C, Bishop, M. J., Bulleri, F., Farhan, R., Frühling, V. M. M., et al. 2022a. “Heterogeneity within and among Co-Occurring Foundation Species Increases Biodiversity.” Nature Communications 13, no. 1. https://doi.org/10.1038/s41467-022-28194-y.
Thomsen, M. S., Altieri, A. H., Angelini, C., Bishop, M. J., Bulleri, F., Farhan, R., Frühling, V. M. M., et al. 2022b. “Publisher Correction: Heterogeneity within and among Co-Occurring Foundation Species Increases Biodiversity.” Nature Communications 13, no. 1. https://doi.org/10.1038/s41467-022-29347-9.
Wilson, S. K., Fulton, C. J., Graham, N., Abesamis, R. A., Berkström, C., Coker, D. J., Depczynski, M., et al. 2022. “The Contribution of Macroalgae‐Associated Fishes to Small‐Scale Tropical Reef Fisheries.” Fish and Fisheries 23, no. 4, 847–61. https://doi.org/10.1111/faf.12653.
Wilkes Walburn, J., Rourke, M. L., Furlan, E., DiBattista, J. D., Broadhurst, M. K., Fowler, A. M., Hughes, J. M., Fielder, S.. 2022. “Robust Environmental DNA Assay Development and Validation: A Case Study with Two Vulnerable Australian Fish.” Aquatic Conservation: Marine and Freshwater Ecosystems 32, no. 7, 1225–31. https://doi.org/10.1002/aqc.3809.
Wood, G., Steinberg, P. D., Campbell, A. H., Vergés, A., Coleman, M. A., Marzinelli, E. M. 2022. “Host Genetics, Phenotype and Geography Structure the Microbiome of a Foundational Seaweed.” Edited by Jacob Russell. Molecular Ecology 31, no. 7, 2189–2206. https://doi.org/10.1111/mec.16378.
Woodroffe, C. D, Carvalho, R. C., Oliver, T. S. N., Thom, B. G.. 2022. “Sediment Dynamics at Different Timescales on an Embayed Coast in Southeastern Australia.” Journal of Coastal Conservation 26, no. 3. https://doi.org/10.1007/s11852-022-00867-2.
Wright, A. S., Doblin, M. A., Scanes, P. R.. 2022. “Improper Maintenance Activities Alter Benefits of Urban Stormwater Treatment in a Temperate Constructed Wetland in NSW, Australia.” Frontiers in Environmental Chemistry 3, no. 834191. https://doi.org/10.3389/fenvc.2022.834191.
Vadillo Gonzalez, S., Clark, G. F., Johnston, E. L., Turney, C., Fogwill, C. J., Steinberg, P. D., Marzinelli, E. M. 2022. “Spatial Variation in Microbial Communities Associated with Sea-Ice Algae in Commonwealth Bay, East Antarctica.” Microbiology 168, no. 4. https://doi.org/10.1099/mic.0.001176.
Vergés, A., Lanham, B. S., Kono, M., Okumura, S., Nakamura, Y.. 2022. “Differences in Fish Herbivory among Tropical and Temperate Seaweeds and Annual Patterns in Kelp Consumption Influence the Tropicalisation of Temperate Reefs.” Scientific Reports 12, no. 1. https://doi.org/10.1038/s41598-022-24666-9.

2021

Ajani, PA, Sarowar, C, Turnbull, A, Farrell, H, Zammit, A, Helleren, S, Hallegraeff, G & Murray, SA 2021a, ‘A Comparative Analysis of Methods (LC-MS/MS, LC-MS and Rapid Test Kits) for the Determination of Diarrhetic Shellfish Toxins in Oysters, Mussels and Pipis’, Toxins, vol. 13, no. 8, p. 563. https://doi.org/10.3390/toxins13080563
Ajani, PA, Verma, A, Kim, JH, Woodcock, S, Nishimura, T, Farrell, H, Zammit, A, Brett, S & Murray, SA 2021b, ‘Using qPCR and high-resolution sensor data to model a multi-species Pseudo-nitzschia (Bacillariophyceae) bloom in southeastern Australia’, Harmful Algae, vol. 108, p. 102095.
Argyle, PA, Hinners, J, Walworth, NG, Collins, S, Levine, NM & Doblin, MA 2021a, ‘A High-Throughput Assay for Quantifying Phenotypic Traits of Microalgae’, Frontiers in Microbiology, vol. 12.
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Argyle, PA, Walworth, NG, Hinners, J, Collins, S, Levine, NM & Doblin, MA 2021b, ‘Multivariate trait analysis reveals diatom plasticity constrained to a reduced set of biological axes’, ISME Communications, vol. 1, no. 1.
‘Australia’ 2021, De Gruyter eBooks, pp. 59–209. https://doi.org/10.1038/s43705-021-00062-8
Balogh, R & Byrne, M 2021, ‘Developing in the intertidal: effects of salinity and temperature on development to the pentameral juvenile seastar, Parvulastra exigua’, Marine Biology, vol. 168, no. 7. 10.1007/s00227-021-03902-2
Birrer, SC, Franziska Wemheuer, Dafforn, KA, Gribben, PE, Steinberg, PD, Simpson, SL, Potts, J, Scanes, P, Doblin, MA & Johnston, EL 2021, ‘Legacy Metal Contaminants and Excess Nutrients in Low Flow Estuarine Embayments Alter Composition and Function of Benthic Bacterial Communities’, Frontiers in Microbiology, vol. 12, Frontiers Media. https://doi.org/10.3389/fmicb.2021.661177
Bradley, DJ, Boada, J, Gladstone, W, Glasby, TM & Gribben, PE 2021, ‘Sublethal effects of a rapidly spreading native alga on a key herbivore’, Ecology and Evolution, vol. 11, no. 18, pp. 12605–12616. https://doi.org/10.1002/ece3.8005
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Chua, M, Simon, McMahon, CR, Jonsen, ID & Mark de Bruyn 2021, ‘Dispersal of southern elephant seals (Mirounga leonina) from Davis Base, Antarctica: Combining population genetics and tracking data’, bioRxiv (Cold Spring Harbor Laboratory), Cold Spring Harbor Laboratory.10.1101/2021.11.26.470169
Cleeland, JB, Pardo, D, Raymond, B, Tuck, GN, McMahon, CR, Phillips, RA, Alderman, R, Lea, M-A & Hindell, MA 2021, ‘Disentangling the Influence of Three Major Threats on the Demography of an Albatross Community’, Frontiers in Marine Science, vol. 8. https://doi.org/10.3389/fmars.2021.578144
Codello, A, McLellan, SL, Steinberg, P, Potts, J, Scanes, P, Ferguson, A, Hose, GC, Griffith, M, Roguet, A, Lydon, KA, Maher, WA, Krikowa, F & Chariton, A 2021, ‘A weight-of-evidence approach for identifying potential sources of untreated sewage inputs into a complex urbanized catchment’, Environmental Pollution, vol. 275, p. 116575. https://doi.org/10.1016/j.envpol.2021.116575
Cole, VJ, Parker, LM, Scanes, E, Wright, J, Barnett, L & Ross, PM 2021, ‘Climate change alters shellfish reef communities: A temperate mesocosm experiment’, Marine Pollution Bulletin, vol. 173, no. pt B, p. 113113. https://doi.org/10.1016/j.envpol.2021.116575
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D’Agostino, D, Burt, JA, Santinelli, V, Vaughan, GO, Fowler, AM, Reader, T, Taylor, BM, Hoey, AS, Cavalcante, GH, Bauman, AG & Feary, DA 2021, ‘Growth impacts in a changing ocean: insights from two coral reef fishes in an extreme environment’, Coral Reefs, vol. 40, no. 2, pp. 433–446. https://doi.org/10.1007/s00338-021-02061-6
DiBattista, JD, West, KM, Hay, AC, Hughes, JM, Fowler, AM & McGrouther, MA 2021, ‘Community‐based citizen science projects can support the distributional monitoring of fishes’, Aquatic Conservation: Marine and Freshwater Ecosystems, vol. 31, no. 12. https://doi.org/10.1002/aqc.3726
Dittami, SM, Arboleda, E, Auguet, J-C, Bigalke, A, Briand, E, Cárdenas, P, Cardini, U, Decelle, J, Engelen, AH, Eveillard, D, Gachon, CMM, Griffiths, SM, Harder, T, Kayal, E, Kazamia, E, Lallier, FH, Medina, M, Marzinelli, EM, Morganti, TM & Núñez Pons, L 2021, ‘A community perspective on the concept of marine holobionts: current status, challenges, and future directions’, PeerJ, vol. 9, https://doi.org/10.7717/peerj.10911
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Elodie J. I. Lédée, Heupel, MR, Taylor, MD, Harcourt, R, Fabrice R. A. Jaine, Huveneers, C, Vinay Udyawer, Campbell, HA, Babcock, RC, Hoenner, X, Barnett, A, Braccini, M, Brodie, S, Butcher, PA, Gwenaël Cadiou, Dwyer, RG, Espinoza, M, Ferreira, LC, Lachlan Fetterplace & Fowler, AJ 2021, ‘Continental‐scale acoustic telemetry and network analysis reveal new insights into stock structure’, Fish and Fisheries, vol. 22, Wiley-Blackwell, no. 5, pp. 987–1005. https://doi.org/10.1111/faf.12565
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Ferrari, J, Goncalves, P, Campbell, AH, Sudatti, DB, Wood, GV, Thomas, T, Pereira, RC, Steinberg, PD & Marzinelli, EM 2021, ‘Molecular analysis of a fungal disease in the habitat‐forming brown macroalga Phyllospora comosa (Fucales) along a latitudinal gradient’, in T Wernberg (ed.), Journal of Phycology, vol. 57, no. 5, pp. 1504–1516. https://doi.org/10.1111/jpy.13180
Ferretto, G, Glasby, TM, Poore, AGB, Callaghan, CT, Housefield, GP, Langley, M, Sinclair, EA, Statton, J, Kendrick, GA & Vergés, A 2021, ‘Naturally-detached fragments of the endangered seagrass Posidonia australis collected by citizen scientists can be used to successfully restore fragmented meadows’, Biological Conservation, vol. 262, p. 109308. https://doi.org/10.1016/j.biocon.2021.109308
Firth, LB, Curd, A, Hawkins, SJ, Knights, AM, Blaze, JA, Burrows, MT, Dubois, SF, Edwards, H, Foggo, A, Gribben, PE, Grant, L, Harris, D, Mieszkowska, N, Nunes, FLD, Nunn, JD, Power, AM, O’Riordan, RM, McGrath, D, Simkanin, C & O’Connor, NE 2021, ‘On the diversity and distribution of a data deficient habitat in a poorly mapped region: The case of Sabellaria alveolata L. in Ireland’, Marine Environmental Research, vol. 169, p. 105344. https://doi.org/10.1016/j.marenvres.2021.105344
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Foo, D, McMahon, CR, Hindell, MA & Goldsworthy, S 2021, ‘Shelf–oceanic dynamics of surface environmental parameters in the Kangaroo Island–Bonney Coast region’, Marine and Freshwater Research, vol. 72, CSIRO Publishing, no. 5, pp. 679–679. https://doi.org/10.1071/MF20100
Fowler, AM, Hall, KC, Liggins, GW & Chick, RC 2021, ‘Prioritising fished stocks for monitoring and assessment: A decision analysis approach for diverse fisheries of limited commercial value’, Ocean & Coastal Management, vol. 199, p. 105404. https://doi.org/10.1016/j.ocecoaman.2020.105404
Gibbs, MC, Parker, LM, Scanes, E, Byrne, M, O’Connor, WA & Ross, PM 2021a, ‘Adult exposure to ocean acidification and warming leads to limited beneficial responses for oyster larvae’, in H Browman (ed.), ICES Journal of Marine Science, vol. 78, no. 6, pp. 2017–2030. https://doi.org/10.1093/icesjms/fsab071
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Gibbs, MC, Parker, LM, Scanes, E, Byrne, M, O’Connor, WA & Ross, PM 2021c, ‘Energetic lipid responses of larval oysters to ocean acidification’, Marine Pollution Bulletin, vol. 168, p. 112441. https://doi.org/10.1016/j.marpolbul.2021.112441
Gnoinski, GB, Close, DC, Schmidt, SA & Kerslake, FL 2021, ‘Towards Accelerated Autolysis? Dynamics of Phenolics, Proteins, Amino Acids and Lipids in Response to Novel Treatments and during Ageing of Sparkling Wine’, Beverages, vol. 7, no. 3, p. 50. https://doi.org/10.3390/beverages7030050
Gómez-García, M de J, Blázquez-Moreno, M del C, Stewart, JD, Leos-Barajas, V, Fonseca-Ponce, IA, Zavala-Jiménez, AA, Fuentes, K & Ketchum, JT 2021, ‘Quantifying the Effects of Diver Interactions on Manta Ray Behavior at Their Aggregation Sites’, Frontiers in Marine Science, vol. 8. https://doi.org/10.3389/fmars.2021.639772
Harcourt, R, Hindell, MA, McMahon, CR, Goetz, KT, Charrassin, J-B, Heerah, K, Holser, R, Jonsen, ID, Shero, MR, Hoenner, X, Foster, R, Lenting, B, Tarszisz, E & Pinkerton, MH 2021, ‘Regional Variation in Winter Foraging Strategies by Weddell Seals in Eastern Antarctica and the Ross Sea’, Frontiers in Marine Science, vol. 8. https://doi.org/10.3389/fmars.2021.720335
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Holland, MM, Becker, A, Smith, JA, Everett, JD & Suthers, IM 2021a, ‘Characterizing the three‐dimensional distribution of schooling reef fish with a portable multibeam echosounder’, Limnology and Oceanography: Methods, vol. 19, Wiley-Blackwell, no. 5, pp. 340–355. https://doi.org/10.1002/lom3.10427
Holland, MM, Everett, JD, Cox, MJ, Doblin, MA & Suthers, IM 2021b, ‘Pelagic forage fish distribution in a dynamic shelf ecosystem – Thermal demands and zooplankton prey distribution’, Estuarine, Coastal and Shelf Science, vol. 249, p. 107074. https://doi.org/10.1016/j.ecss.2020.107074
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Junk, EJ, Smith, JA, Suthers, IM & Taylor, MD 2021, ‘Bioenergetics of blue swimmer crab (Portunus armatus) to inform estimation of release density for stock enhancement’, Marine and Freshwater Research, vol. 72, no. 9. https://doi.org/10.1071/MF20363
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Niella, Y, Peddemors, VM, Green, M, Smoothey, AF & Harcourt, R 2021a, ‘A “Wicked Problem” Reconciling Human-Shark Conflict, Shark Bite Mitigation, and Threatened Species’, Frontiers in Conservation Science, vol. 2. https://doi.org/10.3389/fcosc.2021.720741
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2020

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Vozzo, M.L. et al. (2020) ‘Wave energy alters biodiversity by shaping intraspecific traits of a habitat‐forming species,’ Oikos, 130(1), pp. 52–65. https://doi.org/10.1111/oik.07590.
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Wynne, J.W. et al. (2020) ‘Microbiome profiling reveals a microbial dysbiosis during a natural outbreak of tenacibaculosis (Yellow mouth) in Atlantic salmon,’ Frontiers in Microbiology, 11. https://doi.org/10.3389/fmicb.2020.586387.

2019

Bolton, D.K., Clark, G.F. and Johnston, E.L. (2019). Novel in situ predator exclusion method reveals the relative effects of macro and mesopredators on sessile invertebrates in the field. Journal of Experimental Marine Biology and Ecology, 513, pp.13–20. doi:https://doi.org/10.1016/j.jembe.2019.02.002.
Bryant, B., Pittard, S., Jordan, N. and McMahon, C. (2019). Chemical capture of wild swamp buffalo (Bubalus bubalis ) in tropical northern Australia using thiafentanil, etorphine and azaperone combinations. Australian Veterinary Journal, 97(1-2), pp.33–38. doi:https://doi.org/10.1111/avj.12782.
Bulleri, F., Marzinelli, E.M., Voerman, S.E. and Gribben, P.E. (2020). Propagule composition regulates the success of an invasive seaweed across a heterogeneous seascape. Journal of Ecology, 108(3), pp.1061–1073. doi:https://doi.org/10.1111/1365-2745.13313.
Butcher, P.A., Piddocke, T.P., Colefax, A.P., Hoade, B., Peddemors, V.M., Borg, L. and Cullis, B.R. (2019). Beach safety: can drones provide a platform for sighting sharks? Wildlife Research, [online] 46(8), p.701. doi:https://doi.org/10.1071/wr18119.
Byrne, M., Foo, S.A., Ross, P.M. and Putnam, H.M. (2019). Limitations of cross and multigenerational plasticity for marine invertebrates faced with global climate change. Global Change Biology, 26(1). doi:https://doi.org/10.1111/gcb.14882.
Carpentier, A.S., Berthe, C., Ender, I., Jaine, F.R.A., Mourier, J., Stevens, G., De Rosemont, M. and Clua, E. (2019a). Correction to: Preliminary insights into the population characteristics and distribution of reef (Mobula alfredi) and oceanic (M. birostris) manta rays in French Polynesia. Coral Reefs, 38(6), pp.1353–1353. doi:https://doi.org/10.1007/s00338-019-01862-0.
Carpentier, A.S., Berthe, C., Ender, I., Jaine, F.R.A., Mourier, J., Stevens, G., De Rosemont, M. and Clua, E. (2019b). Preliminary insights into the population characteristics and distribution of reef (Mobula alfredi) and oceanic (M. birostris) manta rays in French Polynesia. Coral Reefs, 38(6), pp.1197–1210. doi:https://doi.org/10.1007/s00338-019-01854-0.
Craig, J.R. (2019). A low cost 1-cm accuracy electronic fish measurement board. Fisheries Research, 210, pp.198–203. doi:https://doi.org/10.1016/j.fishres.2018.08.013.
Critchley, L.P. and Bishop, M.J. (2019). Differences in Soft-Sediment Infaunal Communities Between Shorelines with and Without Seawalls. Estuaries and Coasts, 42(4), pp.1127–1137. doi:https://doi.org/10.1007/s12237-019-00527-z.
D. Goodwin, I., Ribó, M. and Mortlock, T. (2020). Coastal sediment compartments, wave climate and centennial-scale sediment budget. Sandy Beach Morphodynamics, pp.615–640. doi:https://doi.org/10.1016/b978-0-08-102927-5.00025-4.
Darling, E.S., McClanahan, T.R., Maina, J., Gurney, G.G., Graham, N.A.J., Januchowski-Hartley, F., Cinner, J.E., Mora, C., Hicks, C.C., Maire, E., Puotinen, M., Skirving, W.J., Adjeroud, M., Ahmadia, G., Arthur, R., Bauman, A.G., Beger, M., Berumen, M.L., Bigot, L. and Bouwmeester, J. (2019). Social–environmental drivers inform strategic management of coral reefs in the Anthropocene. Nature Ecology & Evolution, 3(9), pp.1341–1350. doi:https://doi.org/10.1038/s41559-019-0953-8.
Davis, R.W., Bodkin, J.L., Coletti, H.A., Monson, D.H., Larson, S.E., Carswell, L.P. and Nichol, L.M. (2019). Future Directions in Sea Otter Research and Management. Frontiers in Marine Science, [online] 5. doi:https://doi.org/10.3389/fmars.2018.00510.
Deaker, D.J., Foo, S.A. and Byrne, M. (2019). Variability in egg and jelly-coat size and their contribution to target size for spermatozoa: a review for the Echinodermata. Marine and Freshwater Research, 70(7), p.995. doi:https://doi.org/10.1071/mf18134.
Dittami, S.M., Arboleda, E., Jean-Christophe Auguet, Bigalke, A., Briand, E., Paco Cárdenas, Cardini, U., Decelle, J., Engelen, A.H., Eveillard, D., Gachon, C., Griffiths, S.M., Harder, T., Kayal, E., Kazamia, E., Lallier, F.H., Medina, M., Marzinelli, E.M., Teresa Maria Morganti and Laura Núñez Pons (2019). A community perspective on the concept of marine holobionts: current status, challenges, and future directions. Plymouth Marine Science Electronic Archive (The Marine Biological Association (MBA), Plymouth Marine Laboratory (PML) and the Sir Alister Hardy Foundation for Ocean Science (SAHFOS).). doi:https://doi.org/10.7287/peerj.preprints.27519.
Djurichkovic, L.D., Donelson, J.M., Fowler, A.M., Feary, D.A. and Booth, D.J. (2019). The effects of water temperature on the juvenile performance of two tropical damselfishes expatriating to temperate reefs. Scientific Reports, [online] 9(1), p.13937. doi:https://doi.org/10.1038/s41598-019-50303-z.
Doane, M.P., Morris, M.M., Bhavya Papudeshi, Allen, L.B., Pande, D., Haggerty, J.M., Shaili Johri, Turnland, A., Peterson, M., Dovi Kacev, Nosal, A., Ramirez, D., Hovel, K.A., Ledbetter, J., Alker, A.T., Avalos, J., Baker, K., Bhide, S., Billings, E. and Byrum, S. (2019). The skin microbiome of elasmobranchs follows phylosymbosis, but in teleost fishes the microbiomes converge. Research Square (Research Square). doi:https://doi.org/10.21203/rs.2.19644/v1.
Domínguez-Tejo, E. and Metternicht, G. (2019). An ecosystem-based approach and Bayesian modelling to inform coastal planning: A case study of Manly, Australia. Environmental Science & Policy, 101, pp.72–86. doi:https://doi.org/10.1016/j.envsci.2019.07.019.
Duffy, J.E., Benedetti-Cecchi, L., Trinanes, J., Muller-Karger, F.E., Ambo-Rappe, R., Boström, C., Buschmann, A.H., Byrnes, J., Coles, R.G., Creed, J., Cullen-Unsworth, L.C., Diaz-Pulido, G., Duarte, C.M., Edgar, G.J., Fortes, M., Goni, G., Hu, C., Huang, X., Hurd, C.L. and Johnson, C. (2019). Toward a Coordinated Global Observing System for Seagrasses and Marine Macroalgae. Frontiers in Marine Science, 6. doi:https://doi.org/10.3389/fmars.2019.00317.
Ferguson, E.L. and Ferguson, B.G. (2019). High-precision acoustic localization of dolphin sonar click transmissions using a modified method of passive ranging by wavefront curvature. Journal of the Acoustical Society of America, 146(6), pp.4790–4801. doi:https://doi.org/10.1121/1.5138935.
Fernando Teran Arce, Bestley, S., Hindell, M.A., Harcourt, R. and Wotherspoon, S. (2019). A quantitative, hierarchical approach for detecting drift dives and tracking buoyancy changes in southern elephant seals. Scientific Reports, 9(1). doi:https://doi.org/10.1038/s41598-019-44970-1.
Figueira, W.F., Curley, B. and Booth, D.J. (2019). Can temperature-dependent predation rates regulate range expansion potential of tropical vagrant fishes? Marine Biology, 166(6). doi:https://doi.org/10.1007/s00227-019-3521-5.
Filippini, G., Bugnot, A.B., Johnston, E.L., Ruszczyk, J., Potts, J., Scanes, P., Ferguson, A., Ostrowski, M., Varkey, D. and Dafforn, K.A. (2019). Sediment bacterial communities associated with environmental factors in Intermittently Closed and Open Lakes and Lagoons (ICOLLs). Science of The Total Environment, 693, p.133462. doi:https://doi.org/10.1016/j.scitotenv.2019.07.268.
Fitzer, S.C., McGill, R.A.R., Torres Gabarda, S., Hughes, B., Dove, M., O’Connor, W. and Byrne, M. (2019). Selectively bred oysters can alter their biomineralization pathways, promoting resilience to environmental acidification. Global Change Biology, 25(12), pp.4105–4115. doi:https://doi.org/10.1111/gcb.14818.
Gorta, S.B.Z., Smith, J.A., Everett, J.D., Kingsford, R.T., Cornwell, W.K., Suthers, I.M., Epstein, H., McGovern, R., McLachlan, G., Roderick, M., Smith, L., Williams, D. and Callaghan, C.T. (2019). Pelagic citizen science data reveal declines of seabirds off south-eastern Australia. Biological Conservation, 235, pp.226–235. doi:https://doi.org/10.1016/j.biocon.2019.05.007.
Gribben, P.E., Angelini, C., Altieri, A.H., Bishop, M.J., Thomsen, M.S. and Bulleri, F. (2019). Facilitation Cascades in Marine Ecosystems: A Synthesis and Future Directions. Oceanography and Marine Biology, pp.127–168. doi:https://doi.org/10.1201/9780429026379-3.
Guyomard, D., Perry, C., Tournoux, P.U., Cliff, G., Peddemors, V. and Jaquemet, S. (2019). An innovative fishing gear to enhance the release of non-target species in coastal shark-control programs: The SMART (shark management alert in real-time) drumline. Fisheries Research, 216, pp.6–17. doi:https://doi.org/10.1016/j.fishres.2019.03.011.
Harcourt, R., Sequeira, A.M.M., Zhang, X., Roquet, F., Komatsu, K., Heupel, M., McMahon, C., Whoriskey, F., Meekan, M., Carroll, G., Brodie, S., Simpfendorfer, C., Hindell, M., Jonsen, I., Costa, D.P., Block, B., Muelbert, M., Woodward, B., Weise, M. and Aarestrup, K. (2019). Animal-Borne Telemetry: An Integral Component of the Ocean Observing Toolkit. Frontiers in Marine Science, 6. doi:https://doi.org/10.3389/fmars.2019.00326.
Harianto, J., Carey, N. and Byrne, M. (2019). respR—An R package for the manipulation and analysis of respirometry data. Methods in Ecology and Evolution, 10(6), pp.912–920. doi:https://doi.org/10.1111/2041-210x.13162.
Hays, G.C., Bailey, H., Bograd, S.J., Bowen, W.D., Campagna, C., Carmichael, R.H., Casale, P., Chiaradia, A., Costa, D.P., Cuevas, E., Nico de Bruyn, P.J., Dias, M.P., Duarte, C.M., Dunn, D.C., Dutton, P.H., Esteban, N., Friedlaender, A., Goetz, K.T., Godley, B.J. and Halpin, P.N. (2019). Translating Marine Animal Tracking Data into Conservation Policy and Management. Trends in Ecology & Evolution, [online] 34(5), pp.459–473. doi:https://doi.org/10.1016/j.tree.2019.01.009.
Henschke, N., Pakhomov, E.A., Kwong, L.E., Everett, J.D., Laiolo, L., Coghlan, A.R. and Suthers, I.M. (2019). Large Vertical Migrations of Pyrosoma atlanticum Play an Important Role in Active Carbon Transport. Journal of Geophysical Research: Biogeosciences, 124(5), pp.1056–1070. doi:https://doi.org/10.1029/2018jg004918.
Horning, M., Andrews, R.D., Bishop, A.M., Boveng, P.L., Costa, D.P., Crocker, D.E., Haulena, M., Hindell, M., Hindle, A.G., Holser, R.R., Hooker, S.K., Hückstädt, L.A., Johnson, S., Lea, M.-A., McDonald, B.I., McMahon, C.R., Robinson, P.W., Sattler, R.L., Shuert, C.R. and Steingass, S.M. (2019). Best practice recommendations for the use of external telemetry devices on pinnipeds. Animal Biotelemetry, [online] 7(1). doi:https://doi.org/10.1186/s40317-019-0182-6.
Hughes, J.M., Stewart, J. and Collins, D. (2019a). Experimental hyperbaric chamber trials reveal high resilience to barotrauma in Australian snapper (Chrysophrys auratus). Fisheries Research, 212, pp.172–182. doi:https://doi.org/10.1016/j.fishres.2018.12.024.
Hughes, J.M., Stewart, J. and Collins, D. (2019b). Simulated catch-and-release using experimental hyperbaric chamber trials reveal high levels of delayed mortality due to barotrauma in mulloway (Argyrosomus japonicus). Journal of Experimental Marine Biology and Ecology, 516, pp.89–102. doi:https://doi.org/10.1016/j.jembe.2019.05.001.
Jarvis, R.M. and Young, T. (2019). Key research priorities for the future of marine science in New Zealand. Marine Policy, 106, p.103539. doi:https://doi.org/10.1016/j.marpol.2019.103539.
Jay, R., Waltham, N.J., Huang, J., Teasdale, P.R. and King, B. (2019). Protecting Water Quality in Urban Estuaries: Australian Case Studies. Coasts and Estuaries. doi:https://doi.org/10.1016/b978-0-12-814003-1.00005-8.
Johri, S., Doane, M., Allen, L. and Dinsdale, E. (2019a). Taking Advantage of the Genomics Revolution for Monitoring and Conservation of Chondrichthyan Populations. Diversity, 11(4), p.49. doi:https://doi.org/10.3390/d11040049.
Junge, C., Donnellan, S.C., Huveneers, C., Bradshaw, C.J.A., Simon, A., Drew, M., Duffy, C., Johnson, G., Cliff, G., Braccini, M., Cutmore, S.C., Butcher, P., McAuley, R., Peddemors, V., Rogers, P. and Gillanders, B.M. (2019). Comparative population genomics confirms little population structure in two commercially targeted carcharhinid sharks. Marine Biology, 166(2). doi:https://doi.org/10.1007/s00227-018-3454-4.
Karelitz, S., Lamare, M.D., Mos, B., De Bari, H., Dworjanyn, S.A. and Byrne, M. (2019). Impact of growing up in a warmer, lower pH future on offspring performance: transgenerational plasticity in a pan-tropical sea urchin. Coral Reefs, 38(6), pp.1085–1095. doi:https://doi.org/10.1007/s00338-019-01855-z.
Kelaher, B., Peddemors, V., Hoade, B., Colefax, A. and Butcher, P. (2019). Comparison of sampling precision for nearshore marine wildlife using unmanned and manned aerial surveys. Journal of Unmanned Vehicle Systems, 8(1). doi:https://doi.org/10.1139/juvs-2018-0023.
Leuzinger, S., Borrelle, S.B. and Jarvis, R.M. (2019). Improving Climate-Change Literacy and Science Communication Through Smart Device Apps. Frontiers in Education, [online] 4. doi:https://doi.org/10.3389/feduc.2019.00138.
Levin, L.A., Bett, B.J., Gates, A.R., Heimbach, P., Howe, B.M., Janssen, F., McCurdy, A., Ruhl, H.A., Snelgrove, P., Stocks, K.I., Bailey, D., Baumann-Pickering, S., Beaverson, C., Benfield, M.C., Booth, D.J., Carreiro-Silva, M., Colaço, A., Eblé, M.C., Fowler, A.M. and Gjerde, K.M. (2019). Global Observing Needs in the Deep Ocean. Frontiers in Marine Science, 6. doi:https://doi.org/10.3389/fmars.2019.00241.
Linklater, M., Ingleton, T.C., Kinsela, M.A., Morris, B.D., Allen, K.M., Sutherland, M.D. and Hanslow, D.J. (2019). Techniques for Classifying Seabed Morphology and Composition on a Subtropical-Temperate Continental Shelf. Geosciences, 9(3), p.141. doi:https://doi.org/10.3390/geosciences9030141.
Longford, S.R., Campbell, A.H., Nielsen, S., Case, R.J., Kjelleberg, S. and Steinberg, P.D. (2019). Interactions within the microbiome alter microbial interactions with host chemical defences and affect disease in a marine holobiont. Scientific Reports, 9(1). doi:https://doi.org/10.1038/s41598-018-37062-z.
Macolino, A.C., Dafforn, K.A., Hedge, L.H., Poore, A.G.B. and Johnston, E.L. (2019). Fine-Scale Effects of Boat Moorings on Soft Sediment Communities Masked in Large-Scale Comparisons. Frontiers in Marine Science, 6. doi:https://doi.org/10.3389/fmars.2019.00101.
McDonald, J., McGee, J., Brent, K. and Burns, W. (2019). Governing geoengineering research for the Great Barrier Reef. Climate Policy, 19(7), pp.801–811. doi:https://doi.org/10.1080/14693062.2019.1592742.
McGeoch, M.A., Latombe, G., Andrew, N.R., Nakagawa, S., Nipperess, D.A., Roigé, M., Marzinelli, E.M., Campbell, A.H., Vergés, A., Thomas, T., Steinberg, P.D., Selwood, K.E., Henriksen, M.V. and Hui, C. (2019). Measuring continuous compositional change using decline and decay in zeta diversity. Ecology, 100(11). doi:https://doi.org/10.1002/ecy.2832.
McMahon, C.R., Hindell, M.A., Charrassin, J.-B., Corney, S., Guinet, C., Harcourt, R., Jonsen, I., Trebilco, R., Williams, G. and Bestley, S. (2019). Finding mesopelagic prey in a changing Southern Ocean. Scientific Reports, 9(1). doi:https://doi.org/10.1038/s41598-019-55152-4.
Miranda, T., Smith, J.A., Suthers, I.M., Mazumder, D., Cruz, D.O., Schilling, H.T., Searle, K. and Vergés, A. (2019). Convictfish on the move: variation in growth and trophic niche space along a latitudinal gradient. Ices Journal of Marine Science, 76(7), pp.2404–2412. doi:https://doi.org/10.1093/icesjms/fsz098.
Murray, S.A., Ruvindy, R., Kohli, G.S., Anderson, D.M. and Brosnahan, M.L. (2019). Evaluation of sxtA and rDNA qPCR assays through monitoring of an inshore bloom of Alexandrium catenella Group 1. Scientific Reports, [online] 9(1), p.14532. doi:https://doi.org/10.1038/s41598-019-51074-3.
O’Brien, A.L., Dafforn, K.A., Chariton, A.A., Johnston, E.L. and Mayer-Pinto, M. (2019). After decades of stressor research in urban estuarine ecosystems the focus is still on single stressors: A systematic literature review and meta-analysis. Science of The Total Environment, 684, pp.753–764. doi:https://doi.org/10.1016/j.scitotenv.2019.02.131.
Pannell, J.L., Amrit Melissa Dencer-Brown, Greening, S.S., Hume, E.A., Jarvis, R.M., Mathieu, C., Mugford, J. and Rogini Runghen (2019). An early career perspective on encouraging collaborative and interdisciplinary research in ecology. Ecosphere, 10(10). doi:https://doi.org/10.1002/ecs2.2899.
Peng, C., Duarte, C.M., Costa, D.P., Christophe Guinet, Harcourt, R., Hindell, M.A., McMahon, C.R., Mônica M. C. Muelbert, Thums, M., Wong, K.-C. and Zhang, X. (2019). Deep Learning Resolves Representative Movement Patterns in a Marine Predator Species. Applied sciences, 9(14), pp.2935–2935. doi:https://doi.org/10.3390/app9142935.
Pirog, A., Ravigné, V., Fontaine, M.C., Rieux, A., Gilabert, A., Cliff, G., Clua, E., Daly, R., Heithaus, M.R., Kiszka, J.J., Matich, P., Nevill, J.E.G., Smoothey, A.F., Temple, A.J., Berggren, P., Jaquemet, S. and Magalon, H. (2019). Population structure, connectivity, and demographic history of an apex marine predator, the bull sharkCarcharhinus leucas. Ecology and Evolution, 9(23), pp.12980–13000. doi:https://doi.org/10.1002/ece3.5597.
Qiu, Z., Coleman, M.A., Provost, E., Campbell, A.H., Kelaher, B.P., Dalton, S.J., Thomas, T., Steinberg, P.D. and Marzinelli, E.M. (2019). Future climate change is predicted to affect the microbiome and condition of habitat-forming kelp. Proceedings of the Royal Society B: Biological Sciences, 286(1896), p.20181887. doi:https://doi.org/10.1098/rspb.2018.1887.
Raoult, V., Broadhurst, M.K., Peddemors, V.M., Williamson, J.E. and Gaston, T.F. (2019a). Resource use of great hammerhead sharks ( Sphyrna mokarran ) off eastern Australia. Journal of Fish Biology, 95(6), pp.1430–1440. doi:https://doi.org/10.1111/jfb.14160.
Raoult, V., Williamson, J.E., Smith, T.M. and Gaston, T.F. (2019b). Effects of on-deck holding conditions and air exposure on post-release behaviours of sharks revealed by a remote operated vehicle. Journal of Experimental Marine Biology and Ecology, 511, pp.10–18. doi:https://doi.org/10.1016/j.jembe.2018.11.003.
Ricardo De Paoli-Iseppi, Deagle, B.E., Polanowski, A.M., Harcourt, R., Dickinson, J.L., Hindell, M.A. and Jarman, S.N. (2019). Age estimation in a long‐lived seabird ( Ardenna tenuirostris ) using DNA methylation‐based biomarkers. Molecular Ecology Resources, 19(2), pp.411–425. doi:https://doi.org/10.1111/1755-0998.12981.
Rogers, A.D., Frinault, B.A.V., Barnes, D.K.A., Bindoff, N.L., Downie, R., Ducklow, H.W., Friedlaender, A.S., Hart, T., Hill, S.L., Hofmann, E.E., Linse, K., McMahon, C.R., Murphy, E.J., Pakhomov, E.A., Reygondeau, G., Staniland, I.J., Wolf-Gladrow, D.A. and Wright, R.M. (2020). Antarctic Futures: An Assessment of Climate-Driven Changes in Ecosystem Structure, Function, and Service Provisioning in the Southern Ocean. Annual Review of Marine Science, 12(1), pp.87–120. doi:https://doi.org/10.1146/annurev-marine-010419-011028.
Schaefer, N., Dafforn, K.A., Johnston, E.L. and Mayer-Pinto, M. (2019a). Corrigendum to: Size, depth and position affect the diversity and structure of rock pool communities in an urban estuary. Marine and Freshwater Research, 70(7), p.1045. doi:https://doi.org/10.1071/mf18074_co.
Schaefer, N., Dafforn, K.A., Johnston, E.L. and Mayer-Pinto, M. (2019b). Size, depth and position affect the diversity and structure of rock pool communities in an urban estuary. Marine and Freshwater Research, [online] 70(7), p.1034. doi:https://doi.org/10.1071/mf18074.
Schilling, H.T., Smith, J.A., Stewart, J., Everett, J.D., Hughes, J.M. and Suthers, I.M. (2019). Reduced exploitation is associated with an altered sex ratio and larger length at maturity in southwest Pacific (east Australian) Pomatomus saltatrix. Marine Environmental Research, 147, pp.72–79. doi:https://doi.org/10.1016/j.marenvres.2019.02.012.
Seebacher, F. and Simmonds, A.I.M. (2019). Histone deacetylase activity mediates thermal plasticity in zebrafish (Danio rerio). Scientific Reports, 9(1). doi:https://doi.org/10.1038/s41598-019-44726-x.
Sequeira, A.M.M., Heupel, M.R., Lea, M. ‐A., Eguíluz, V.M., Duarte, C.M., Meekan, M.G., Thums, M., Calich, H.J., Carmichael, R.H., Costa, D.P., Ferreira, L.C., Fernandéz‐Gracia, J., Harcourt, R., Harrison, A. ‐L., Jonsen, I., McMahon, C.R., Sims, D.W., Wilson, R.P. and Hays, G.C. (2019). The importance of sample size in marine megafauna tagging studies. Ecological Applications, 29(6). doi:https://doi.org/10.1002/eap.1947.
Shaili Johri, Fellows, S.R., Solanki, J., Busch, A., Livingston, I., Mora, M.F., Tiwari, A., Goodman, A.Z., Cantu, A., Doane, M.P., Morris, M.M., Edwards, R.A. and Dinsdale, E.A. (2019b). Genomics to aid species delimitation and effective conservation of the Sharpnose Guitarfish (Glaucostegus granulatus). BioRxiv. doi:https://doi.org/10.1101/767186.
Simpson, M., Morris, R.L., Harasti, D. and Coleman, R.A. (2019). The endangered White’s seahorse Hippocampus whitei chooses artificial over natural habitats. Journal of Fish Biology, 95(2), pp.555–561. doi:https://doi.org/10.1111/jfb.14002.
Smith, J.A., Eyre, B.D., Rosentreter, J.A. and Taylor, M.D. (2019a). Modelling estuarine stocking density for crustaceans using net ecosystem metabolism. Bulletin of Marine Science, 95(2), pp.217–238. doi:https://doi.org/10.5343/bms.2018.0047.
Smith, K.E., Byrne, M., Deaker, D., Hird, C.M., Nielson, C., Wilson-McNeal, A. and Lewis, C. (2019b). Sea urchin reproductive performance in a changing ocean: poor males improve while good males worsen in response to ocean acidification. Proceedings of the Royal Society B: Biological Sciences, 286(1907), p.20190785. doi:https://doi.org/10.1098/rspb.2019.0785.
Smoothey, A.F., Lee, K.A. and Peddemors, V.M. (2019). Long-term patterns of abundance, residency and movements of bull sharks (Carcharhinus leucas) in Sydney Harbour, Australia. Scientific Reports, 9(1). doi:https://doi.org/10.1038/s41598-019-54365-x.
Strain, E.M.A., Morris, R.L., Coleman, R.A., Figueira, W.F., Steinberg, P.D., Johnston, E.L. and Bishop, M.J. (2019). Corrigendum to ‘Increasing microhabitat complexity on seawalls can reduce fish predation on native oysters’ [Ecol. Eng. 120 (2018) 637–644]. Ecological Engineering, 131, p.135. doi:https://doi.org/10.1016/j.ecoleng.2019.02.005.
Trevathan-Tackett, S.M., Sherman, C.D.H., Huggett, M.J., Campbell, A.H., Laverock, B., Hurtado-McCormick, V., Seymour, J.R., Firl, A., Messer, L.F., Ainsworth, T.D., Negandhi, K.L., Daffonchio, D., Egan, S., Engelen, A.H., Fusi, M., Thomas, T., Vann, L., Hernandez-Agreda, A., Gan, H.M. and Marzinelli, E.M. (2019). A horizon scan of priorities for coastal marine microbiome research. Nature Ecology & Evolution, 3(11), pp.1509–1520. doi:https://doi.org/10.1038/s41559-019-0999-7.
Tulloch, V., Pirotta, V., Grech, A., Crocetti, S., Double, M., How, J., Kemper, C., Meager, J., Peddemors, V., Waples, K., Watson, M. and Harcourt, R. (2019). Long-term trends and a risk analysis of cetacean entanglements and bycatch in fisheries gear in Australian waters. Biodiversity and Conservation, 29(1), pp.251–282. doi:https://doi.org/10.1007/s10531-019-01881-x.
Ushiama, S., Mayer-Pinto, M., Bugnot, A.B., Johnston, E.L. and Dafforn, K.A. (2019). Eco-engineering increases habitat availability and utilisation of seawalls by fish. Ecological Engineering, 138, pp.403–411. doi:https://doi.org/10.1016/j.ecoleng.2019.07.022.
Valdor, P.F., Gómez, A.G., Juanes, J.A., Kerléguer, C., Steinberg, P., Tanner, E., MacLeod, C., Knights, A.M., Seitz, R.D., Airoldi, L., Firth, L.B., Crowe, T., Chatzinikolaou, E., Smith, A., Arvanitidis, C., Burt, J.A., Brooks, P.R., Ponti, M., Soares-Gomes, A. and Ovejero, A. (2019). A global atlas of the environmental risk of marinas on water quality. Marine Pollution Bulletin, [online] 149, p.110661. doi:https://doi.org/10.1016/j.marpolbul.2019.110661.
Vergés, A., McCosker, E., Mayer‐Pinto, M., Coleman, M.A., Wernberg, T., Ainsworth, T. and Steinberg, P.D. (2019). Tropicalisation of temperate reefs: Implications for ecosystem functions and management actions. Functional Ecology, 33(6). doi:https://doi.org/10.1111/1365-2435.13310.
Verma, A., Kazandjian, A., Chowdhury Sarowar, D. Tim Harwood, J. Sam Murray, Insa Pargmann, Hoppenrath, M. and Murray, S.A. (2019). Morphology and Phylogenetics of Benthic Prorocentrum Species (Dinophyceae) from Tropical Northwestern Australia. Toxins, 11(10), pp.571–571. doi:https://doi.org/10.3390/toxins11100571.
Vila Pouca, C. and Brown, C. (2019). Lack of social preference between unfamiliar and familiar juvenile Port Jackson sharks Heterodontus portusjacksoni. Journal of Fish Biology, 95(2). doi:https://doi.org/10.1111/jfb.13982.
Vila Pouca, C., Gervais, C., Reed, J., Michard, J. and Brown, C. (2019). Quantity discrimination in Port Jackson sharks incubated under elevated temperatures. Behavioral Ecology and Sociobiology, [online] 73(7). doi:https://doi.org/10.1007/s00265-019-2706-8.
Voerman, S.E., Glasby, T.M., Gladstone, W. and Gribben, P.E. (2019). Morphological variation of a rapidly spreading native macroalga across a range of spatial scales and its tolerance to sedimentation. Marine Environmental Research, 147, pp.149–158. doi:https://doi.org/10.1016/j.marenvres.2019.02.017.
Wernberg, T., Coleman, M.A., Babcock, R.C., Bell, S.Y., Bolton, J.J., Connell, S.D., Hurd, C.L., Johnson, C.R., Marzinelli, E.M., Shears, N.T., Steinberg, P.D., Thomsen, M.S., Vanderklift, M.A., Vergés, A. and Wright, J.T. (2019). Biology and Ecology of the Globally Significant Kelp Ecklonia radiata. Oceanography and Marine Biology, pp.265–323. doi:https://doi.org/10.1201/9780429026379-6.
Wood, G., Marzinelli, E.M., Coleman, M.A., Campbell, A.H., Santini, N.S., Kajlich, L., Verdura, J., Wodak, J., Steinberg, P.D. and Vergés, A. (2019). Restoring subtidal marine macrophytes in the Anthropocene: trajectories and future-proofing. Marine and Freshwater Research, 70(7), p.936. doi:https://doi.org/10.1071/mf18226.
Woodings, L.N., Murphy, N.P., Jeffs, A., Suthers, I.M., Liggins, G.W. and Strugnell, J.M. (2019). Distribution of Palinuridae and Scyllaridae phyllosoma larvae within the East Australian Current: a climate change hot spot. Marine and Freshwater Research, 70(7), p.1020. doi:https://doi.org/10.1071/mf18331.
Xiao, Z., Wang, X.H., Roughan, M. and Harrison, D. (2019). Numerical modelling of the Sydney Harbour Estuary, New South Wales: Lateral circulation and asymmetric vertical mixing. Estuarine, Coastal and Shelf Science, 217, pp.132–147. doi:https://doi.org/10.1016/j.ecss.2018.11.004.
Young, H.J., Raoult, V., Platell, M.E., Williamson, J.E. and Gaston, T.F. (2019). Within-genus differences in catchability of elasmobranchs during trawling. Fisheries Research, 211, pp.141–147. doi:https://doi.org/10.1016/j.fishres.2018.11.015.

2018

Agüera, A., & Byrne, M. (2018). A dynamic energy budget model to describe the reproduction and growth of invasive starfish Asterias amurensis in southeast Australia. Biological Invasions.
Bugnot, A., Hose, G., Walsh, C., Floerl, O., French, K., & Dafforn, K. et al. (2018). Urban impacts across realms: Making the case for inter-realm monitoring and management. Science of The Total Environment, 648, 711-719. doi: 10.1016/j.scitotenv.2018.08.134
Brodie, S., Lédée, E., Heupel, M., Babcock, R., Campbell, H., & Gledhill, D. et al. (2018). Continental-scale animal tracking reveals functional movement classes across marine taxa. Scientific Reports, 8(1).
Chan, K., Sewell, M., & Byrne, M. (2018). Revisiting the larval dispersal black box in the Anthropocene. ICES Journal of Marine Science. doi: 10.1093/icesjms/fsy097
Couturier, L., Newman, P., Jaine, F., Bennett, M., Venables, WN., Cagua, EF., Townsend, K., Weeks, S., Richardson, A. (2018). Variation in occupancy and habitat use of Mobula alfredi at a major aggregation site. Marine Ecology Progress Series, 599, 125-145, doi:10.3354/meps12610
Espinel-Velasco, N., Hoffmann, L., Agüera, A., Byrne, M., Dupont, S., & Uthicke, S. et al. (2018). Effects of ocean acidification on the settlement and metamorphosis of marine invertebrate and fish larvae: a review. Marine Ecology Progress Series, 606, 237-257. doi: 10.3354/meps12754
Foo, S., Deaker, D., & Byrne, M. (2018). Cherchez la femme – impact of ocean acidification on the egg jelly coat and attractants for sperm. The Journal of Experimental Biology, 221(13), jeb177188. doi: 10.1242/jeb.177188
Heery, E., Dafforn, K., Smith, J., Ushiama, S., & Mayer-Pinto, M. (2018). Not all artificial structures are created equal: Pilings linked to greater ecological and environmental change in sediment communities than seawalls. Marine Environmental Research, 142, 286-294. http://dx.doi: 10.1016/j.marenvres.2018.08.012
Hoenner, X., Huveneers, C., Steckenreuter, A., Simpfendorfer, C., Tattersall, K., & Jaine, F. et al. (2018). Australia’s continental-scale acoustic tracking database and its automated quality control process. Scientific Data, 5, 170206. http://dx.doi.org/10.1038/sdata.2017.206
Kienker, S., Coleman, R., Morris, R., Steinberg, P., Bollard, B., & Jarvis, R. et al. (2018). Bringing harbours alive: Assessing the importance of eco-engineered coastal infrastructure for different stakeholders and cities. Marine Policy, 94, 238-246. doi: 10.1016/j.marpol.2018.04.028
Lachnit, T., Dafforn, K., Johnston, E., & Steinberg, P. (2018). Contrasting distributions of bacteriophages and eukaryotic viruses from contaminated coastal sediments. Environmental Microbiology. http://dx.doi: 10.1111/1462-2920.14340
Lamare, M., Harianto, J., Uthicke, S., Agüera, A., Karelitz, S., & Pecorino, D. et al. (2018). Larval thermal windows in native and hybrid Pseudoboletia progeny (Echinoidea) as potential drivers of the hybridization zone. Marine Ecology Progress Series, 598, 99-112. doi: 10.3354/meps12601
Lawson, C., Suthers, I., Smith, J., Schilling, H., Stewart, J., Hughes, J., & Brodie, S. (2018). The influence of ontogenetic diet variation on consumption rate estimates: a marine example. Scientific Reports, 8(1). http://dx.doi: 10.1038/s41598-018-28479-7
Lee, K., Roughan, M., Harcourt, R., & Peddemors, V. (2018). Environmental correlates of relative abundance of potentially dangerous sharks in nearshore areas of southeastern Australia. Marine Ecology Progress Series, 599, 157-179. https://doi.org/10.3354/meps12611
Martino, C., Costa, C., Roccheri, M., Koop, D., Scudiero, R., & Byrne, M. (2018). Gadolinium perturbs expression of skeletogenic genes, calcium uptake and larval development in phylogenetically distant sea urchin species. Aquatic Toxicology, 194, 57-66. http://dx.doi.org/10.1016/j.aquatox.2017.11.004
Marzinelli, E., Qiu, Z., Dafforn, K., Johnston, E., Steinberg, P., & Mayer-Pinto, M. (2018). Coastal urbanisation affects microbial communities on a dominant marine holobiont. Npj Biofilms and Microbiomes, 4(1). http://dx.doi.org/10.1038/s41522-017-0044-z
Pauthenet, E., Roquet, F., Madec, G., Guinet, C., Hindell, MA., McMahon, C., Harcourt, R., Nerini, D. (2018). Seasonal meandering of the Polar Front upstream of the Kerguelen Plateau, Geophysical Research Letters, 45 (18), 9774-9781, doi:10.1029/2018GL079614
Porter, A., Ferrari, R., Kelaher, B., Smith, S., Coleman, R., Byrne, M., & Figueira, W. (2018). Marine infrastructure supports abundant, diverse fish assemblages at the expense of beta diversity. Marine Biology, 165(7). doi: 10.1007/s00227-018-3369-0
Rohner, C., Richardson, A., Jaine, F., Bennett, M., Weeks, S., & Cliff, G. et al. (2018). Satellite tagging highlights the importance of productive Mozambican coastal waters to the ecology and conservation of whale sharks. Peerj, 6, e4161. doi: 10.7717/peerj.4161
Rowe, C., Figueira, W., Raubenheimer, D., Solon-Biet, S., & Machovsky-Capuska, G. (2018). Effects of temperature on macronutrient selection, metabolic and swimming performance of the Indo-Pacific Damselfish (Abudefduf vaigiensis). Marine Biology, 165(11). http://dx.doi: 10.1007/s00227-018-3435-7
Schilling, H., Reis-Santos, P., Hughes, J., Smith, J., Everett, J., & Stewart, J. et al. (2018). Evaluating estuarine nursery use and life history patterns of Pomatomus saltatrix in eastern Australia. Marine Ecology Progress Series. http://dx.doi.org/10.3354/meps12495
Sequeira, A., Rodriguez, J., Eguiluz, V., Harcourt, R., Hindell, MA., Sims, DW., Duarte, CM., Costa, D., Fernandez-Gracia, J., Ferreira, LC., Hays, GC., Heupel, M., Meekan, MG., et, al. (2018). Convergence of marine megafauna movement patterns in coastal and open oceans, Proceedings of the National Academy of Sciences of the United States of America, 115 (12), 3072-3077. doi:10.1073/pnas.1716137115
Stewart, J.D., Jaine, F.R., Armstrong, A.O., Bennett, M.B., Burgess, K.B., Stevens, G.M., et al. (2018) Research priorities to support effective manta and devil ray conservation. Frontiers in Marine Science, 5 (314), 1-27. https://doi.org/10.3389/fmars.2018.00314
Turnbull, J., Shah Esmaeili, Y., Clark, G., Figueira, W., Johnston, E., & Ferrari, R. (2018). Key drivers of effectiveness in small marine protected areas. Biodiversity and Conservation. http://dx.doi.org/10.1007/s10531-018-1532-z Udyawer, V., Dwyer, R., Hoenner, X., Babcock, R., Brodie, S.,Taylor, M., et al. (2018). A standardised framework for analysing detection data from automated tracking arrays. Animal Biotelemetry, 6(1). doi: 10.1186/s40317-018-0162-2
Waltham, N., & Dafforn, K. (2018). Ecological engineering in the coastal seascape. Ecological Engineering, 120, 554-559. http:dx.doi: 10.1016/j.ecoleng.2018.07.028

2017

Beck, H., Feary, D., Nakamura, Y., & Booth, D. (2017). Temperate macroalgae impacts tropical fish recruitment at forefronts of range expansion. Coral Reefs, 36(2), 639-651. http://dx.doi.org/10.1007/s00338-017-1553-1.
Dafforn, K. (in press). Eco-engineering and management strategies for marine infrastructure to reduce establishment and dispersal of non-indigenous species. Management Of Biological Invasions, 8(2), 153-161. http://dx.doi.org/10.3391/mbi.2017.8.2.03.
Everett, J., van Sebille, E., Taylor, M., Suthers, I., Setio, C., Cetina-Heredia, P., & Smith, J. (2017). Dispersal of Eastern King Prawn larvae in a western boundary current: New insights from particle tracking. Fisheries Oceanography. http://dx.doi.org/10.1111/fog.12213.
Harrison, D. (2017). Global negative emissions capacity of ocean macronutrient fertilization. Environmental Research Letters, 12(3), 035001. http://dx.doi.org/10.1088/1748-9326/aa5ef5.
Heery, E., Bishop, M., Critchley, L., Bugnot, A., Airoldi, L., & Mayer-Pinto, M. et al. (2017). Identifying the consequences of ocean sprawl for sedimentary habitats. Journal of Experimental Marine Biology and Ecology, 492, 31-48. http://dx.doi.org/10.1016/j.jembe.2017.01.020.
Kohli, G., Haslauer, K., Sarowar, C., Kretzschmar, A., Boulter, M., & Harwood, D. et al. (2017). Qualitative and quantitative assessment of the presence of ciguatoxin, P-CTX-1B, in Spanish Mackerel ( Scomberomorus commerson ) from waters in New South Wales (Australia). Toxicology Reports, 4, 328-334. http://dx.doi.org/10.1016/j.toxrep.2017.06.006.
Lawes, J., Dafforn, K., Clark, G., Brown, M., & Johnston, E. (in press). Multiple stressors in sediments impact adjacent hard substrate habitats and across biological domains. Science of The Total Environment, 592, 295-305. http://dx.doi.org/10.1016/j.scitotenv.2017.03.083.
Levin, R., Suggett, D., Nitschke, M., van Oppen, M., & Steinberg, P. (2017). Expanding the Symbiodinium (Dinophyceae, Suessiales) Toolkit Through Protoplast Technology. Journal Of Eukaryotic Microbiology, 64(5), 588-597. http://dx.doi.org/10.1111/jeu.12393.
Levin, R., Voolstra, C., Agrawal, S., Steinberg, P., Suggett, D., & van Oppen, M. (2017). Engineering Strategies to Decode and Enhance the Genomes of Coral Symbionts. Frontiers In Microbiology, 8. http://dx.doi.org/10.3389/fmicb.2017.01220.
Puritz, J., Keever, C., Addison, J., Barbosa, S., Byrne, M., & Hart, M. et al. (2017). Life-history predicts past and present population connectivity in two sympatric sea stars. Ecology and Evolution, 7(11), 3916-3930. http://dx.doi.org/10.1002/ece3.29.

2016

Ainley LB, Vergés A, Bishop MJ (in press) Congruence of intraspecific variability in leaf traits for two co-occurring estuarine angiosperms. Oecologia (accepted, 8 April, 2016)
Armansin, N., Lee, K., Huveneers, C., Harcourt, R. 2016. Integrating social network analysis and fine-scale positioning to characterise the associations of a benthic shark. Animal Behaviour 115 (2016) 245e258.
Bain KF and Poore AGB. 2016. Use of near infrared reflectance spectroscopy (NIRS) to quantify diet mixing in a marine generalist herbivore. Marine Biology 163: 79.
Baird DJ; Van Den Brink PJ; Chariton AA; Dafforn KA; Johnston EL, 2016, ‘New diagnostics for multiply stressed marine and freshwater ecosystems: Integrating models, ecoinformatics and big data’, Marine and Freshwater Research, vol. 67, no. 4, pp. 391 – 392, http://dx.doi.org/10.1071/MF15330
Banks JL; Hutchings P; Curley B; Hedge L; Creese B; Johnston E, 2016, ‘Biodiversity conservation in Sydney Harbour’, Pacific Conservation Biology, vol. 22, no. 2, pp. 98 – 109,http://dx.doi.org/10.1071/PC15048
Bishop MJ, Mayer-Pinto M, Airoldi L, Firth LB, Morris RL, Loke LHL, Hawkins SJ, Naylor LA, Coleman RA, Chee SY, Dafforn KA (in press) Effects of ocean sprawl on ecological connectivity: impacts and solutions. J Exp Mar Biol Ecol (accepted, 29 May, 2016) Invited review
Bugnot AB, Coleman RA, Figueira WF & Marzinelli EM (2016) Effects of the receiving assemblage and disturbance on the colonisation of an invasive species. Marine Biology In press (accepted 31/05/2016)
Dafforn KA; Johnston EL; Ferguson A; Humphrey CL; Monk W; Nichols SJ; Simpson SL; Tulbure MG; Baird DJ, 2016, ‘Big data opportunities and challenges for assessing multiple stressors across scales in aquatic ecosystems’, Marine and Freshwater Research, vol. 67, no. 4, pp. 393 – 413,http://dx.doi.org/10.1071/MF15108
Domínguez-Tejo E; Metternicht G; Johnston E; Hedge L, 2016, ‘Marine Spatial Planning advancing the Ecosystem-Based Approach to coastal zone management: A review’, Marine Policy, vol. 72, pp. 115 – 130, http://dx.doi.org/10.1016/j.marpol.2016.06.023
Edge KJ; Johnston EL; Dafforn KA; Simpson SL; Kutti T; Bannister RJ, 2016, ‘Sub-lethal effects of water-based drilling muds on the deep-water sponge Geodia barretti’, Environmental Pollution, vol. 212, pp. 525
Evans SM, Sinclair E, Poore AGB, Bain KF, Vergés A. 2016. Genotypic richness predicts phenotypic variation in an endangered clonal plant. PeerJ 4:e1633. 534, http://dx.doi.org/10.1016/j.envpol.2016.02.047
Flood M, Stobutzki I, Andrews J, Ashby C, Begg G, Fletcher R, Gardner C, Georgeson L, Hansen S, Hartmann K, Hone P, Larcombe J, Maloney L, Moore A, Roach J, Roelofs A, Sainsbury K, Saunders T, Sloan S, Smith T, Stewart J, Wise B (2016). Multijurisdictional fisheries performance reporting: how Australia’s nationally standardised approach to assessing stock status compares. Fisheries Research – In Press
Hughes LE and Poore AGB. 2016. Biancolina japonica Ishimaru 1996: first record of this burrowing amphipod from Australia and a review of host use in the genus Biancolina (Amphipoda: Peracarida: Crustacea). Marine Biodiversity Records 9:32.
Hughes, J.M., Rowland, A.J., Stewart, J., Gill, H.S. (2016). Discovery of a specialised anatomical structure in some physoclistous carangid fishes which permits rapid ascent without barotrauma. Marine Biology.
Hughes, J.M., Stewart, J., Gillanders, B.M., Collins, D., & Suthers, I.M. (2016). Relationship between otolith chemistry and age in a widespread pelagic teleost Arripis trutta: influence of adult movements on stock structure and implications for management. Marine and Freshwater Research.
Gonçalves P, Anderson KA, Thompson EL, Melwani AR, Parker L, Ross PM, Raftos DA. 2016. Rapid transcriptional acclimation following transgenerational exposure of oysters to ocean acidification. Molecular Ecology. In Press.
Green TJ, Chataway T, Melwani AR, Raftos DA. 2016. Proteomic analysis of hemolymph from poly(I:C)-stimulated Crassostrea gigas. Fish & Shellfish Immunology 48: 39-42
Hays GC, Ferreira LC, Sequeira AMM, Meekan MG, Duarte CM, Bailey H, Bailleul F, Bowen WD, Cayley MJ, Costa DP, Eguiluz VM, Fossette S, Friedlaender AS, Gales N, Gleiss AC, Gunn J, Harcourt R, Hazen E, Heithaus MR, Heupel M, Holland K, Horning M, Jonsen I, Kooyman G, Lowe CG, Madsen PT, Marsh H, Phillips R, Righton D, Ropert- Coudert Y, Sato K, Shaffer S, Simpfendorfer CA, Sims DW, Skomal G, Takahashi A, Trathan PN, Wikelski M, Womble J, Thums M. 2016. Key questions in marine megafauna movement ecology. Trends in Ecology and Evolution DOI: 10.1016/j.tree.2016.02.015
Heery HC, Bishop MJ, Critchley L, Bugnot AB, Airoldi L, Mayer-Pinto M, Sheehan EV, Coleman RA, Loke LHL, Johnston EJ, Komyakova V, Morris RL, Strain EMA, Naylor LA, Dafforn KA (in press) Identifying the consequences of ocean sprawl for sedimentary habitats. J Exp Mar Biol Ecol (accepted, 29 May, 2016) Invited review
Henschke N, JD Everett, A Richardson, IM Suthers. 2016. Rethinking the role of salps in the ocean. Trends in Ecology and Evolution. 14 June 2016
Henschke N, JD Everett, IM Suthers. 2016. An observation of two oceanic salp swarms in the Tasman Sea: Thetys vagina and Cyclosalpa affinis. Marine Biodiversity Records in press.
Hindell, M.A., McMahon, C.R., Bester, M.N., Boehme, L., Costa, D., Fedak, M.A., Guinet, C., Herraiz-Borreguero, L., Harcourt, R.G., Huckstadt, L., Kovacs, K., M., Lydersen, C., McIntyre, T., Muelbert, M.M.C., Patterson, T., Roquet, F., Williams, G. & Charrassin, J.B. 2016. Circumpolar habitat use in the southern elephant seal: implications for foraging success and population trajectories. Ecosphere 7(5):e01213. 10.1002/ecs2.1213
Hughes JM, Stewart J, Gillanders BM, Collins D and Suthers IM. 2016. Relationship between otolith chemistry and age in a widespread pelagic teleost Arripis trutta: influence of adult movements on stock structure and implications for management. Marine & Freshwater Research 67: 224-237
Huveneers, C., Simpfendorfer, Colin; Kim, S., Semmens, J., Hobday, A., Pederson, H., Stieglitz, T., Vallee, R., Webber, D., Heupel, M., Peddemors, V., Harcourt, R. 2016. The influence of environmental parameters on the performance and detection range of acoustic receivers. Methods in Ecology and Evolution. DOI: 10.1111/2041-210X.12520.
Keller K, AS Steffe, M Lowry, JJ Murphy and IM Suthers. 2016. Monitoring boat-based recreational fishing effort at a nearshore artificial reef with a shore-based camera. Fisheries Research: 181: 84-92.
Lawes JC; Clark GF; Johnston EL, 2016, ‘Contaminant cocktails: Interactive effects of fertiliser and copper paint on marine invertebrate recruitment and mortality’, Marine Pollution Bulletin, vol. 102, no. 1, pp. 148 – 159, http://dx.doi.org/10.1016/j.marpolbul.2015.11.040
Lawes JC; Neilan BA; Brown MV; Clark GF; Johnston EL, 2016, ‘Elevated nutrients change bacterial community composition and connectivity: high throughput sequencing of young marine biofilms’,Biofouling: the journal of bioadhesion and biofilm research, vol. 32, no. 1, pp. 57 – 69,http://dx.doi.org/10.1080/08927014.2015.1126581
Masood M, Raftos DA, Nair SV. 2016 Two oyster species that show differential susceptibility to virus infection also show differential proteomic responses to generic dsRNA. Journal of Proteome Research. 15(6):1735-46.
Melwani AR, Thompson EL, Raftos DA. 2016. Differential proteomic response of Sydney rock oysters (Saccostrea glomerata) to prolonged environmental stress. Aquatic Toxicology. 173:53-62.
McAfee D, Cole VJ, Bishop MJ (2016) Latitudinal gradients in ecosystem engineering by oysters vary across habitats. Ecology 97:929-939
McGowan, J., Beger, M., Lewison, R., Harcourt, R., Campbell, H., Priest, M., Dwyer, R., Lin, H-Y., Lentini, P., Dudgeon, C., McMahon, C., Watts, M., Possingham, H. 2016. Linking research using animal-borne telemetry with the needs of conservation management. Journal of Applied Ecology. DOI: 10.1111/1365-2664.1275
Nicastro A, Lee KM, Bishop MJ (in press) Assimilation of organic matter by two benthic consumers across gradients of latitude and of nutrient enrichment. Mar Freshwater Res (accepted, 4 May, 2016)
Payne, N. L., Smith, J. A., van der Meulen, D. E., Taylor, M. D., Watanabe, Y. Y., Takahashi, A., Marzullo, T. A., Gray, C. A., Cadiou, G., Suthers, I. M. (2016), Temperature dependence of fish performance in the wild: links with species biogeography and physiological thermal tolerance. Functional Ecology, 30: 903–912. doi: 10.1111/1365-2435.12618.
Poore AGB, Graham S, Byrne M and Dworjanyn SA. 2016. Effects of ocean warming and lowered pH on algal growth and palatability to a grazing gastropod. Marine Biology 163: 99.
Raftos DA, Melwani AR, Haynes PA, Muralidharan S, Birch GF, Amaral V, Thompson EL, Taylor DA. 2016. The Biology of Environmental Stress: Molecular Biomarkers in Sydney Rock Oysters (Saccostrea glomerata). Environmental Science: Processes & Impacts. DOI: 10.1039/C6EM00322B.
Schaeffer A, M Roughan, T Austin, JD Everett, D Griffin, B Hollings, E King, A Mantovanelli, S Milburn, B Pasquer, C Pattiaratchi, R Robertson, D Stanley, IM Suthers and D White. 2016. Mean hydrography on the continental shelf from 26 repeat glider deployments along Southeastern Australia (Paper #SDATA-15-00212A),
Schnell, A. K., Smith, C. L., Hanlon, R. T., Hall, K., Harcourt, R. 2016. Cuttlefish perform multiple agonistic displays to communicate a hierarchy of threats. Behavioral Ecology and Sociobiology. DOI: 10.1007/s00265-016-2170-7
Stelling-Wood TP, Clark GF and Poore AGB. 2016. Responses of ghost crabs to human modification of urban sandy beaches. Marine Environmental Research 116: 32-40.
Thompson EL, Parker L, Amaral V, Bishop, MJ, O’Connor WA, Raftos DA (2016) Wild populations of Sydney rock oysters differ in their proteomic responses to elevated carbon dioxide. Mar Freshwater Res http://dx.doi.org/10.1071/MF15320
Williams, G.D., Herraiz-Borreguero, L., Roquet, F., Tamura, T., Ohshima, K., Fukamachi, Y., Fraser, A. D., Gao, L., Chen, H., McMahon, C. R. Harcourt, R., Hindell, M. 2016. The suppression of Antarctic Bottom Water formation by melting ice shelves in Prydz Bay. Nature Communications DOI 10.1038/ncomms12577
Ushiama S, JA Smitha, IM Suthers, M Lowry and EL Johnston. 2016. The effects of substrate material and surface orientation on the developing epibenthic community on a designed artificial reef. Biofouling in press. Accepted 29 July16

Publications

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Our Harbour Our Asset

Oceanography in the Days of Sail

Science of Gamay: A systematic review of current knowledge of Botany Bay

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2016