Publications

Our Harbour Our Asset

SIMS Associate Fellow Caroline Hoisington 

An overview of economic activities and values associated with Australia’s most iconic harbour and its use by the city that surrounds it. Sydney Institute of Marine Science Technical Report – Our Harbour Our Asset

Oceanography in the Days of Sail

Prof Ian Jones & Joyce Jones

The waters of the Pacific have played an important part in the development of the science of oceanography. Expeditions organised in the days of sail power were conducted in the face of hardships and dangers unknown today.

This book will be of interest to those drawn by the romance of the sea: to sailors, yachtsmen, and hydrographers. Click here to read the e-book.

Journal Articles

See below for a selection of SIMS journal articles:

  • Allegue, H., Guinet, C., Patrick, S. C., Hindell, M. A., McMahon, C. R., Réale, D. 2022. “Sex, Body Size, and Boldness Shape the Seasonal Foraging Habitat Selection in Southern Elephant Seals.” Ecology and Evolution 12, no. 1. https://doi.org/10.1002/ece3.8457.
  • Arce, F., Hindell, M. A., McMahon, C. R., Wotherspoon, S. J., Guinet, C., Harcourt, R. G., Bestley, S.. 2022. “Elephant Seal Foraging Success Is Enhanced in Antarctic Coastal Polynyas.” Proceedings of the Royal Society B: Biological Sciences 289, no. 1967. https://doi.org/10.1098/rspb.2021.2452.
  • Appleyard, S. A., Maher, S, Miskiewicz, A. G., Lara-Lopez, A., Matis, P., Fielder, D. S., Suthers, I. M.. 2022. “Genetic and Morphological Identification of Formalin Fixed, Preserved Larval Fishes; Can We Have the Best of Both Worlds?” Journal of Experimental Marine Biology and Ecology 553, no. 151763. https://doi.org/10.1016/j.jembe.2022.151763.
  • Andrzejaczek, S., Lucas, T. C. D., Goodman, M. C., Hussey, N E., Armstrong, A J., Carlisle, A., Coffey, D. M., et al. 2022. “Diving into the Vertical Dimension of Elasmobranch Movement Ecology.” Science Advances 8, no. 33. https://doi.org/10.1126/sciadv.abo1754.
  • Beltran, R. S., Hindell, M. A., McMahon, C. R.. 2022. “The Elephant Seal: Linking Phenotypic Variation with Behavior and Fitness in a Sexually Dimorphic Phocid.” Springer EBooks, January, 401–40. https://doi.org/10.1007/978-3-030-88923-4_11.
  • Bishop, M. J., Vozzo, M. L., Mayer-Pinto, M., Dafforn, K. A.. 2022. “Complexity–Biodiversity Relationships on Marine Urban Structures: Reintroducing Habitat Heterogeneity through Eco-Engineering.” Philosophical Transactions of the Royal Society B: Biological Sciences 377, no. 1857. https://doi.org/10.1098/rstb.2021.0393.
  • Bosch, N. E, McLean, M, Zarco-Perello, S., Bennett,, S. Stuart-Smith, R. D., Vergés, A., Pessarrodona, A., et al. 2022. “Persistent Thermally Driven Shift in the Functional Trait Structure of Herbivorous Fishes: Evidence of Top‐down Control on the Rebound Potential of Temperate Seaweed Forests?” Global Change Biology 28, no. 7: 2296–2311. https://doi.org/10.1111/gcb.16070.
  • Buenafe, K. C. V., Everett, J. D., Dunn, D. C., Mercer, J., Suthers, I M., Schilling, H. T., Hinchliffe, C.,  Dabalà, A., Richardson, A. J. 2022. “A Global, Historical Database of Tuna, Billfish, and Saury Larval Distributions.” Scientific Data 9, no. 1. https://doi.org/10.1038/s41597-022-01528-7.
  • Bugnot, A. B., Dafforn, K. A., Coleman, R. A., Ramsdale, M., GibbesonJ. T., Erickson, K., Vila‐Concejo, A., Figueira, W. F., Gribben, P. E.. 2022. “Linking Habitat Interactions and Biodiversity within Seascapes.” Ecosphere 13, no. 4. https://doi.org/10.1002/ecs2.4021.
  • Bugnot, A. B., Gribben, P. E., O’Connor, W. A., Erickson, K., Coleman, R. A., Dafforn, K. A. 2022. “Below‐Ground Ecosystem Engineers Enhance Biodiversity and Function in a Polluted Ecosystem.” Journal of Applied Ecology 59, no. 8, 2094–2105. https://doi.org/10.1111/1365-2664.14221.
  • Byers, J.E, Blaze, J. A., Dodd, A. C., Hall, H., Gribben, P. E.. 2022. “Exotic Asphyxiation: Interactions between Invasive Species and Hypoxia.” Biological Reviews 98, no. 1, 150–67. https://doi.org/10.1111/brv.12900.
  • Byrne, M.,. Gall, M. L., Campbell, H., Lamare, M. D., Holmes, S. P.. 2022. “Staying in Place and Moving in Space: Contrasting Larval Thermal Sensitivity Explains Distributional Changes of Sympatric Sea Urchin Species to Habitat Warming.” Global Change Biology 28, no. 9, 3040–53. https://doi.org/10.1111/gcb.16116.
  • Chan, A. J., Raoult, V., Jaine, F. R. A., Peddemors, V. M., Broadhurst, M. K., Williamson, J. E. 2022. “Trophic Niche of Australian Cownose Rays ( Rhinoptera Neglecta ) and Whitespotted Eagle Rays ( Aetobatus Ocellatus ) along the East Coast of Australia.” Journal of Fish Biology 100, no. 4, 970–78. https://doi.org/10.1111/jfb.15028.
  • Chua, M., Ho, S. Y. W., McMahon, C. R., Jonsen, I. D., de Bruynm M. 2022. “Movements of Southern Elephant Seals (Mirounga Leonina) from Davis Base, Antarctica: Combining Population Genetics and Tracking Data.” Polar Biology 45, no. 7, 1163–74. https://doi.org/10.1007/s00300-022-03058-9.
  • Coghlan, A. R., Blanchard, J. L., Heather, F. J., Stuart‐Smith, R. D., Edgar, G. J., Audzijonyte, A.. 2022. “Community Size Structure Varies with Predator–Prey Size Relationships and Temperature across Australian Reefs.” Ecology and Evolution 12, no. 4. https://doi.org/10.1002/ece3.8789.
  • Currie, J., Schilling, H. T., Evans, L., Boyce, T., Lester, N., Greene, G., Little, K., et al. 2022. “Contribution of Avoidable Mortality to Life Expectancy Inequalities in Wales: A Decomposition by Age and by Cause between 2002 and 2020.” Journal of Public Health, no. fdac133. https://doi.org/10.1093/pubmed/fdac133.
  • Davidson, P. L, Byrne, M., Wray, G. A.. 2022. “Evolutionary Changes in the Chromatin Landscape Contribute to Reorganization of a Developmental Gene Network during Rapid Life History Evolution in Sea Urchins.” Edited by Patricia Wittkopp. Molecular Biology and Evolution 39, no. 9.  https://doi.org/10.1093/molbev/msac172.
  • Davidson, P. L., Guo, H., Swart, J. S., Massri, A. J., Edgar, A., Wang, L., Berrio, A., et al. 2022. “Recent Reconfiguration of an Ancient Developmental Gene Regulatory Network in Heliocidaris Sea Urchins.” Nature Ecology and Evolution 6, no. 12, 1907–20. https://doi.org/10.1038/s41559-022-01906-9.
  • DiBattista, J. D., Ambrose, L. K., Buston, P. M., Hobbs, J. A., Moore, B. R., Pope, L. C., Westneat, M. W., et al. 2022. “Social Domination and Environmental Constraint Jointly Dictate Resource Use in a Highly Social Coral Reef Fish.” Ecology and Evolution 12, no. 10. https://doi.org/10.1002/ece3.11020.
  • Doane, M. P, Ostrowski, M., Brown, M. V., Bramucci, A. R., Bodrossy, L., Van de Kamp, J., Bissett, A., Steinberg, P. D., Doblin, M. A., Seymour, J. R.. 2022. “Defining Marine Bacterioplankton Community Assembly Rules by Contrasting the Importance of Environmental Determinants and Biotic Interactions.” BioRxiv. https://doi.org/10.1101/2022.05.02.490371.
  • Dodds, K. C., Schaefer, N., Bishop, M. J., Nakagawa, S., Brooks, P. R., Knights, A. M., Strain, E. M. A.. 2022. “Material Type Influences the Abundance but Not Richness of Colonising Organisms on Marine Structures.” Journal of Environmental Management 307, no. 114549. https://doi.org/10.1016/j.jenvman.2022.114549.
  • Dowling, N., Wilson, J. R., Cope, J. M., Dougherty, D., Lomonico, S., Revenga, C., Snouffer, B. J., et al. 2022. “The FishPath Approach for Fisheries Management in a Data‐ and Capacity‐Limited World.” Fish and Fisheries 24, no. 2, 212–30. https://doi.org/10.1111/faf.12721.
  • Eger, A. M., Eddy, N., Gleason, M., Layton, C., McHugh, T. A., Steinberg, P., Vergés, A. 2022. “The Kelp Forest Alliance: A Global Community of Practice to Understand, Advise, and Motivate Kelp Forest Conservation and Restoration.” Limnology and Oceanography Bulletin 31, no. 4. https://doi.org/10.1002/lob.10528.
  • Eger, A. M., Marzinelli, E. M., Christie, H., Fagerli, C. W., Fujita, D., Gonzalez, A. P., Hong, S. W., et al. 2022. “Global Kelp Forest Restoration: Past Lessons, Present Status, and Future Directions.” Biological Reviews 97, no. 4. https://doi.org/10.1111/brv.12850.
  • Esquivel‐Muelbert, J. R., Lanham, B. S., Martínez‐Baena, F., Dafforn, K. A., Gribben, P. E., Bishop, M. J. 2022. “Spatial Variation in the Biotic and Abiotic Filters of Oyster Recruitment: Implications for Restoration.” Journal of Applied Ecology 59, no. 4 953–64 https://doi.org/10.1111/1365-2664.14107.
  • Ferretto, G., Vergés, A., Poore, A. G. B., Gribben, P. E., Glasby, T. M.. 2022. “Floating Bags Have the Potential to Minimise Oyster Farming Impacts on Posidonia Australis Seagrass Meadows.” Aquaculture 560, no. 738594. https://doi.org/10.1016/j.aquaculture.2022.738594.
  • Filippini, G., Dafforn, K. A., Bugnot, A. B. 2023. “Shellfish as a Bioremediation Tool: A Review and Meta-Analysis.” Environmental Pollution 316, no. 120614. https://doi.org/10.1016/j.envpol.2022.120614.
  • Fowler, A. M., Ochwada-Doyle, F. A., Dowling, N. A., Folpp, H., Hughes, J. M., Lowry, M. B., Lyle, J. M., Lynch, T. P., Miles, M. G., Chick, R. C.. 2022. “Integrating Recreational Fishing into Harvest Strategies: Linking Data with Objectives”. ICES Journal of Marine Science 79, no. 2. https://doi.org/10.1093/icesjms/fsab270.
  • Fu, F., Tschitschko, B., Hutchins, D. A., Larsson, M. E., Baker, K. G,  McInnes, A., Kahlke, T., Verma, A., Murray, S. A., Doblin, M. A.. 2022. “Temperature Variability Interacts with Mean Temperature to Influence the Predictability of Microbial Phenotypes.” Global Change Biology 28, no. 19, 5741–54. https://doi.org/10.1111/gcb.16330.
  • Garcia, V., Schilling, H. T., Cruz, D. O., Hawes, S. M., Everett, J. D., Roughan, M., Miskiewicz, A. G., Pakhomov, E. A., Jeffs, A., Suthers, I. M.. 2022. “Entrainment and Development of Larval Fish Assemblages in Two Contrasting Cold Core Eddies of the East Australian Current System.” Marine Ecology Progress Series 685, no. March, 1–18. https://doi.org/10.3354/meps13982.
  • Garner, N., Ross, P. M., Falkenberg, L. J., Seymour, J. R., Siboni, N., Scanes, E.. 2022. “Can Seagrass Modify the Effects of Ocean Acidification on Oysters?” Marine Pollution Bulletin 177, no. 113438. https://doi.org/10.1016/j.marpolbul.2022.113438.
  • Gavel, I., Byrne, M., Thomson, M.. 2022. “Effects of Raised Temperature on Viviparous Reproduction in the Marine Isopod Cirolana Harfordi.” Journal of Experimental Marine Biology and Ecology 546, no. 151648. https://doi.org/10.1016/j.jembe.2021.151648.
  • Geraldi, N. R., Vozzo, M. L., Fegley, S. R., Anton, A., Peterson, C. H.. 2022. “Oyster Abundance on Subtidal Reefs Depends on Predation, Location, and Experimental Duration.” Ecosphere 13, no. 6. https://doi.org/10.1002/ecs2.4087.
  • Gill, R. L, Collins, S., Argyle, P., Larsson, M. E., Fleck, R., Doblin, M. A.. 2022. “Predictability of Thermal Fluctuations Influences Functional Traits of a Cosmopolitan Marine Diatom.” Proceedings of the Royal Society B: Biological Sciences 289, no. 1973. https://doi.org/10.1098/rspb.2021.2581.
  • Goddard, B. K., Becker, A., Harasti, D., Smith, J. A., Subramaniam, R. C., Suthers, I. M.. 2022. “The Trophic Basis of Fish Assemblages in Temperate Estuarine and Coastal Ecosystems.” Marine Biology 169, no. 2. https://doi.org/10.1007/s00227-021-04001-y.
  • Goodman, K. Z, Niella, Y., Bliss-Henaghan, T., Harcourt, R., Smoothey, A. F., Peddemors, V. M.. 2022. “Ontogenetic Changes in the Tooth Morphology of Bull Sharks ( Carcharhinus Leucas ).” Journal of Fish Biology 101, no. 4, 1033–46. https://doi.org/10.1111/jfb.15170.
  • Grainger, R., Raoult, V., Peddemors, V. M., Machovsky‐Capuska, G. M., Gaston, T. F., Raubenheimer, D. 2022. “Integrating Isotopic and Nutritional Niches Reveals Multiple Dimensions of Individual Diet Specialisation in a Marine Apex Predator.” Journal of Animal Ecology 92, no. 2, 514–34. https://doi.org/10.1111/1365-2656.13852.
  • Gray, C. A. 2022. “Historic, Pre-Stock Enhancement, Demographic Conditions of Exploited Populations of Dusky Flathead, Platycephalus Fuscus, in Eastern Australia.” Aquaculture and Fisheries, September. https://doi.org/10.1016/j.aaf.2022.07.001.
  • Gray, C. A 2022. “Variation in Growth, Length and Age Characteristics of Estuarine Acanthopagrus (Sparidae) Populations in New South Wales, Australia.” Regional Studies in Marine Science 55, no. 102481. https://doi.org/10.1016/j.rsma.2022.102481.
  • Gray, C. A., Chapman, M. G., Underwood, A. J., Rotherham, D.. 2022. “Spatial Management of Estuarine Fisheries Resources: Do Recreational-Only Fished Estuaries Provide Conservation to Harvested Species?” Reviews in Fish Biology and Fisheries 32, no. 4, 1123–40. https://doi.org/10.1007/s11160-022-09723-w.
  • Guillemin, T. A., Pepperell, J. G., Gaston, T., Williamson, J. E.. 2022.“Deciphering the Trophic Ecology of Three Marlin Species Using Stable Isotope Analysis in Temperate Waters off Southeastern Australia.” Frontiers in Marine Science 9, no. 795436. https://doi.org/10.3389/fmars.2022.795436.
  • Hanamseth, R., Hewitt, D. E., Johnson, D. J., Suthers, I. M., Taylor, M. D.. 2022. “An Automated Image Analysis System for Estimating Fecundity in Portunid Crabs.” Fisheries Research 245, no. 106140. https://doi.org/10.1016/j.fishres.2021.106140.
  • Hanamseth, R., Johnson, D. D., Schilling, H. T, Suthers, I. M., Taylor, M. D. 2022. “Evaluation of a Novel Research Trap for Surveys of Blue Swimmer Crab Populations.” Marine and Freshwater Research 73, no. 6, 812–22. https://doi.org/10.1071/mf21005.
  • Hewitt, D. E, Niella, Y., Johnson, D. D., Suthers, I. M., Taylor, M. D. 2022. “Crabs Go with the Flow: Declining Conductivity and Cooler Temperatures Trigger Spawning Migrations for Female Giant Mud Crabs (Scylla Serrata) in Subtropical Estuaries.” Estuaries and Coasts 45, no. 7, 2166–80. https://doi.org/10.1007/s12237-022-01061-1
  • Hewitt, D. E., Schilling, H. T., Hanamseth, R., Everett, J. D., Li, J., Roughan, M., Johnson, D. D., Suthers, I. M., Taylor, M. D.. 2022. “Mesoscale Oceanographic Features Drive Divergent Patterns in Connectivity for Co‐Occurring Estuarine Portunid Crabs.” Fisheries Oceanography 31, no. 6, 587–600. https://doi.org/10.1111/fog.12608.
  • Heinrich, D.D.U., Huveneers, C., Houslay, T. M., Dhellemmes, F., Brown, C.. 2022. “Shark Habituation to a Food-Related Olfactory Cue.” Animal Behaviour 187, no. May, 147–65. https://doi.org/10.1016/j.anbehav.2022.03.003.
  • Hinchliffe, C., Matis, P. A., Schilling, H. T., Everett, J. D., Miskiewicz, A. D., Pepin, P., Falster, D. S., Suthers, I. M.. 2022. “Plankton Size Spectra as an Indicator of Larval Success in Pacific Sardine (Sardinops Sagax).” Fisheries Oceanography 32, no. 2, 196–212. https://doi.org/10.1111/fog.12620.
  • Hindell, M. A, McMahon, C. R., Guinet, C., Harcourt, R., Jonsen, I. D., Raymond, B., Maschette, D. 2022. “Assessing the Potential for Resource Competition between the Kerguelen Plateau Fisheries and Southern Elephant Seals.” Frontiers in Marine Science 9, no. November. https://doi.org/10.3389/fmars.2022.1006120.
  • Hinners, J., Argyle, P., Walworth, N. G., Doblin, M. A., Levine, N. M., Collins., S. 2022. “Multitrait Diversification in Marine Diatoms in Constant and Warmed Environments.” BioRxiv, April. https://doi.org/10.1101/2022.04.08.487611.
  • Hughes, J. M., Meadows, N. M., Stewart, J., Booth, D. J., Fowler, A. M. 2022. “Movement Patterns of an Iconic Recreational Fish Species, Mulloway (Argyrosomus Japonicus), Revealed by Cooperative Citizen-Science Tagging Programs in Coastal Eastern Australia.” Fisheries Research 247, no. 106179. https://doi.org/10.1016/j.fishres.2021.106179.
  • Hughes, J. M., Johnson, D. D., Collins, D., Ochwada‐Doyle, F. A., Murphy, J. J.. 2022. “Factors Affecting Seabird Abundance and Interaction with the Nearshore ‘for Hire’ Recreational Charter Fishery in New South Wales, Australia.” Aquatic Conservation: Marine and Freshwater Ecosystems 32, no. 2: 385–99. https://doi.org/10.1002/aqc.3769.
  • Kienzle, M., Broadhurst, M. K. , Pletzer, A.,  Stewart, J. 2022. “Erratum to ‘a Bayesian Approach to Estimating Mortality Rates Using Hazard Functions: Application to an Australian Halfbeak, Hyporhamphus Australis Fishery’ [Fish. Res. 243 (2021) 10606].” Fisheries Research 245, no. 106137. https://doi.org/10.1016/j.fishres.2021.106137.
  • Larsson, M. E., Bramucci, A. R., Collins, S., Hallegraeff, G., Kahlke, T., Raina, J., Seymour, J. R., and Doblin, M. A. 2022. “Mucospheres Produced by a Mixotrophic Protist Impact Ocean Carbon Cycling.” Nature Communications 13, no. 1. https://doi.org/10.1038/s41467-022-28867-8.
  • Leong, R. C, Bugnot, A. B., Marzinelli, E. M., Figueira, W. F., Erickson, K., Poore, A. G. B., Gribben, P. E.. 2022. “Variation in the Density and Body Size of a Threatened Foundation Species across Multiple Spatial Scales.” Restoration Ecology 30, no. 8. https://doi.org/10.1111/rec.13670
  • Martin, C. L., Curley, B., Wolfenden, K., Green, M., N. A. Moltschaniwskyj. 2022. “The Social Dimension to the New South Wales Shark Management Strategy, 2015–2020, Australia: Lessons Learned.” Marine Policy 141, no. 105079. https://doi.org/10.1016/j.marpol.2022.105079.
  • Martinez, A. S., Dafforn K. A., Johnston, E. L., Filippini, G., Potts, J., Mayer-Pinto, M. 2022. “Variations in Benthic Fluxes of Sediments near Pier Pilings and Natural Rocky Reefs.” Marine Environmental Research 177, no. 105640 https://doi.org/10.1016/j.marenvres.2022.105640.
  • Maslen, B., Popovic, G., Vergés, A., Marzinelli, E. M., Warton, D. I. 2022. “How Many Sites? Methods to Assist Design Decisions When Collecting Multivariate Data in Ecology.” ArXiv (Cornell University), June. https://doi.org/10.48550/arxiv.2206.09524.
  • Mayer-Pinto, M., Jones, T. M., Swearer, S. E., Robert, K. A., Bolton, D., Aulsebrook, A. E., Dafforn, K. A., et al. 2022. “Light Pollution: A Landscape-Scale Issue Requiring Cross-Realm Consideration.” UCL Open Environment 4, no. January. https://doi.org/10.14324/111.444/ucloe.000036.
  • McHuron, E. A., Adamczak, S. K., Arnould, J., Ashe, E., Booth, C., Bowen, W. D., Christiansen, F., et al. 2022. “Key Questions in Marine Mammal Bioenergetics.” Conservation Physiology 10, no. 1. https://doi.org/10.1093/conphys/coac055.
  • McLaren, E. J., Byrne, M.. 2022. “The Effect of Ocean Acidification on the Escape Behaviour of the Sea Star Parvulastra Exigua to Its Sea Star Predator Meridiastra Calcar.” Journal of Experimental Marine Biology and Ecology 555, no. 151779. https://doi.org/10.1016/j.jembe.2022.151779.
  • Mifsud, J. C. O., Costa, V. A., Petrone, M. E., Marzinelli, E. M., Holmes, E. C., Harvey, E.. 2022. “Transcriptome Mining Extends the Host Range of the Flaviviridae to Non-Bilaterians.” Virus Evolution 9, no. 1. https://doi.org/10.1093/ve/veac124.
  • Nappi, J., Goncalves, P., Khan, T. M., Majzoub, M. E., Grobler, A. S., Marzinelli, E. M., Thomas, T., Egan, S.. 2022. “Differential Priority Effects Impact Taxonomy and Functionality of Host‐Associated Microbiomes.” Molecular Ecology, January. https://doi.org/10.1111/mec.16336.
  • Navarro‐Barranco, C., Gribben, P. E, Ledet, J. , Poore, A. G. B. 2022. “Habitat‐Complexity Regulates the Intensity of Facilitation along an Environmental Stress Gradient.” Oikos 2022, no. 4. https://doi.org/10.1111/oik.08818.
  • Nicolle, P., Hughes, J. M., Fowler, A. M., Schilling, H. T.. 2022. “Long-Term Increase in Growth of an Estuarine Predator, Mulloway Argyrosomus Japonicus, Predicted to Continue under Future Warming Scenarios.” Marine Ecology Progress Series 688, no. April, 1–17. https://doi.org/10.3354/meps14048.
  • Niella, Y., Raoult, V., Gaston, T., Goodman, K., Harcourt, R., Peddemors, V., Smoothey, A. F.. 2022. “Reliance of Young Sharks on Threatened Estuarine Habitats for Nutrition Implies Susceptibility to Climate Change.” Estuarine, Coastal and Shelf Science 268, no. 107790. https://doi.org/10.1016/j.ecss.2022.107790.
  • O’Connell, M. J., Fowler, A. M., Allan, S. J., Beretta, G. A., Booth, D. J.. 2022. “Recruiting a Long Way from Home: Domino Damselfish Dascyllus Trimaculatus Can Detect New Temperate Coral Habitat and Conspecifics.” Journal of Fish Biology 100, no. 6, 1548–52. https://doi.org/10.1111/jfb.15064.
  • Pessarrodona, A., Vergés, A. , Bosch, N. B., Bell, S., Smith, S., Sgarlatta, M. P., Wernberg, T. 2022. “Tropicalization Unlocks Novel Trophic Pathways and Enhances Secondary Productivity in Temperate Reefs.” Functional Ecology 36, no. 3, 659–73. https://doi.org/10.1111/1365-2435.13990.
  • Pine, C., Erickson, K., Gribben, P. E., Figueira, W. F.. 2022. “Observation of Juvenile Eastern Blue Groper (Achoerodus Viridis) on Remnant Oyster Reefs in New South Wales, Australia.” Ecology 103, no. 12. https://doi.org/10.1002/ecy.3824.
  • Portela, E., Rintoul, S. R., Herraiz-Borreguero, L., Roquet, F., Bestley, S., van Wijk, E., Tamura, T., et al. 2022. “Controls on Dense Shelf Water Formation in Four East Antarctic Polynyas.” Journal of Geophysical Research: Oceans 127, no. 12. https://doi.org/10.1029/2022jc018804.
  • Riley, M., Meaghe, P., Huveneers, C., Leto, J., Peddemors, V. M., Slip, D., West, J.,  Bradshaw, C. J. A.. 2022. “The Australian Shark-Incident Database for Quantifying Temporal and Spatial Patterns of Shark-Human Conflict.” Scientific Data 9, no. 1, 378. https://doi.org/10.1038/s41597-022-01453-9.
  • Rowe, C. E., Keable, S. J., Ahyong,, S. T., Figueira, W. F.. 2022. “Physiological Responses of the Upside-down Jellyfish, Cassiopea (Cnidaria: Scyphozoa: Cassiopeidae) to Temperature and Implications for Their Range Expansion along the East Coast of Australia.” Journal of Experimental Marine Biology and Ecology 554, no. 151765 https://doi.org/10.1016/j.jembe.2022.151765.
  • Schilling, H. T., Smith, J. A., Everett, J. D., Harrison, D. P., Suthers, I. M.. 2022. “Size-Selective Predation by Three Estuarine Zooplanktivorous Fish Species.” Edited by Daniel Roelke. Marine and Freshwater Research 73, no. 6, 823–32. https://doi.org/10.1071/mf21344.
  • Schilling, H.T., Riley, I. J., Puckeridge, A. C., Milne-Muller, A., Callaghan, C. T. 2022. “Economic Value of Regional Spearfishing Competitions.” Fisheries Research 250, no. 106289. https://doi.org/10.1016/j.fishres.2022.106289.
  • Schilling, H.T., Hewitt, D. E., Malan, N., Taylor, M. D., Johnson, D. D. 2022. “Cross-Jurisdictional Larval Supply Essential for Eastern Australian Spanner Crabs (.” Edited by Jill Chiu. Marine and Freshwater Research 73, no. 11, 1352–67. https://doi.org/10.1071/mf21348.
  • Setyawan, E., Erdmann, M. V., Mambrasar, R., Hasan, A. W., Sianipar, A. B., Constantine, R., Stevenson, B. C., Jaine, F. R. A. 2022. “Residency and Use of an Important Nursery Habitat, Raja Ampat’s Wayag Lagoon, by Juvenile Reef Manta Rays (Mobula Alfredi).” Frontiers in Marine Science 9, no. 815094. https://doi.org/10.3389/fmars.2022.815094.
  • Steinberg, R.K., Ainsworth, T. D., Moriarty, T., Bednarek, T., Dafforn, K. A., Johnston, E. L.. 2022. “Bleaching Susceptibility and Resistance of Octocorals and Anemones at the World’s Southern-Most Coral Reef.” Frontiers in Physiology 13, no. 804193. https://doi.org/10.3389/fphys.2022.804193.
  • Stewart, J., Craig, J. R., Clain, C., Hegarty, A., Meadows, N. M., Gould, A., Young, C.. 2022. “Using Their Heads – a Novel, Collaborative Approach between Industry and Scientists to Monitor a Commercial Mullet Fishery as a Result of COVID-19 Restrictions.” Fisheries Research 250, no. 106272. https://doi.org/10.1016/j.fishres.2022.106272.
  • Stewart, J., Fowler, A. M., Meadows, N. M., Johnson, D. D.. 2022. “Life-History Traits and Commercial Catch Composition of Chelidonichthys Kumu in South-Eastern Australia.” Regional Studies in Marine Science 56, no. 102720. https://doi.org/10.1016/j.rsma.2022.102720.
  • Szabo, E., Arundell, E. J.,  Farrell, H., Imlay, A., King, T., Shadbolt, C., Taylor, M. D.. 2022. “Responding to Incidents of Low-Level Chemical Contamination and Deliberate Contamination in Food.” Elsevier EBooks, January, 359–77. https://doi.org/10.1016/b978-0-12-816011-4.00010-0.
  • Tagliafico, A., Baker, P., Kelaher, B., Ellis, S., Harrison, D.. 2022. “The Effects of Shade and Light on Corals in the Context of Coral Bleaching and Shading Technologies.” Frontiers in Marine Science 9, no. 919382. https://doi.org/10.3389/fmars.2022.919382.
  • Tebbett, S. B, Sgarlatta, M. P., Pessarrodona, A., Vergés, A., Wernberg, T., Bellwood, D. R.. 2022. “How to Quantify Algal Turf Sediments and Particulates on Tropical and Temperate Reefs: An Overview.” Marine Environmental Research 179, no. 105673 https://doi.org/10.1016/j.marenvres.2022.105673.
  • Thomsen, M. S., Altieri, A. H., Angelini, C, Bishop, M. J., Bulleri, F., Farhan, R., Frühling, V. M. M., et al. 2022a. “Heterogeneity within and among Co-Occurring Foundation Species Increases Biodiversity.” Nature Communications 13, no. 1. https://doi.org/10.1038/s41467-022-28194-y.
  • Thomsen, M. S., Altieri, A. H.,  Angelini, C., Bishop, M. J., Bulleri, F., Farhan, R., Frühling, V. M. M., et al. 2022b. “Publisher Correction: Heterogeneity within and among Co-Occurring Foundation Species Increases Biodiversity.” Nature Communications 13, no. 1. https://doi.org/10.1038/s41467-022-29347-9.
  • Wilson, S. K., Fulton, C. J., Graham, N., Abesamis, R. A., Berkström, C., Coker, D. J., Depczynski, M., et al. 2022. “The Contribution of Macroalgae‐Associated Fishes to Small‐Scale Tropical Reef Fisheries.” Fish and Fisheries 23, no. 4, 847–61. https://doi.org/10.1111/faf.12653.
  • Wilkes Walburn, J., Rourke, M. L., Furlan, E., DiBattista, J. D., Broadhurst, M. K., Fowler, A. M., Hughes, J. M., Fielder, S.. 2022. “Robust Environmental DNA Assay Development and Validation: A Case Study with Two Vulnerable Australian Fish.” Aquatic Conservation: Marine and Freshwater Ecosystems 32, no. 7, 1225–31. https://doi.org/10.1002/aqc.3809.
  • Wood, G., Steinberg, P. D., Campbell, A. H., Vergés, A., Coleman, M. A., Marzinelli, E. M. 2022. “Host Genetics, Phenotype and Geography Structure the Microbiome of a Foundational Seaweed.” Edited by Jacob Russell. Molecular Ecology 31, no. 7, 2189–2206. https://doi.org/10.1111/mec.16378.
  • Woodroffe, C. D, Carvalho, R. C., Oliver, T. S. N., Thom, B. G.. 2022. “Sediment Dynamics at Different Timescales on an Embayed Coast in Southeastern Australia.” Journal of Coastal Conservation 26, no. 3. https://doi.org/10.1007/s11852-022-00867-2.
  • Wright, A. S., Doblin, M. A., Scanes, P. R.. 2022. “Improper Maintenance Activities Alter Benefits of Urban Stormwater Treatment in a Temperate Constructed Wetland in NSW, Australia.” Frontiers in Environmental Chemistry 3, no. 834191. https://doi.org/10.3389/fenvc.2022.834191.
  • Vadillo Gonzalez, S., Clark, G. F., Johnston, E. L., Turney, C., Fogwill, C. J., Steinberg, P. D., Marzinelli, E. M. 2022. “Spatial Variation in Microbial Communities Associated with Sea-Ice Algae in Commonwealth Bay, East Antarctica.” Microbiology 168, no. 4. https://doi.org/10.1099/mic.0.001176.
  • Vergés, A., Lanham, B. S., Kono, M., Okumura, S., Nakamura, Y.. 2022. “Differences in Fish Herbivory among Tropical and Temperate Seaweeds and Annual Patterns in Kelp Consumption Influence the Tropicalisation of Temperate Reefs.” Scientific Reports 12, no. 1. https://doi.org/10.1038/s41598-022-24666-9.
  • Bolton, D.K., Clark, G.F. and Johnston, E.L. (2019). Novel in situ predator exclusion method reveals the relative effects of macro and mesopredators on sessile invertebrates in the field. Journal of Experimental Marine Biology and Ecology, 513, pp.13–20. doi:https://doi.org/10.1016/j.jembe.2019.02.002.
  • Bryant, B., Pittard, S., Jordan, N. and McMahon, C. (2019). Chemical capture of wild swamp buffalo (Bubalus bubalis ) in tropical northern Australia using thiafentanil, etorphine and azaperone combinations. Australian Veterinary Journal, 97(1-2), pp.33–38. doi:https://doi.org/10.1111/avj.12782.
  • Bulleri, F., Marzinelli, E.M., Voerman, S.E. and Gribben, P.E. (2020). Propagule composition regulates the success of an invasive seaweed across a heterogeneous seascape. Journal of Ecology, 108(3), pp.1061–1073. doi:https://doi.org/10.1111/1365-2745.13313.
  • Butcher, P.A., Piddocke, T.P., Colefax, A.P., Hoade, B., Peddemors, V.M., Borg, L. and Cullis, B.R. (2019). Beach safety: can drones provide a platform for sighting sharks? Wildlife Research, [online] 46(8), p.701. doi:https://doi.org/10.1071/wr18119.
  • Byrne, M., Foo, S.A., Ross, P.M. and Putnam, H.M. (2019). Limitations of cross and multigenerational plasticity for marine invertebrates faced with global climate change. Global Change Biology, 26(1). doi:https://doi.org/10.1111/gcb.14882.
  • Carpentier, A.S., Berthe, C., Ender, I., Jaine, F.R.A., Mourier, J., Stevens, G., De Rosemont, M. and Clua, E. (2019a). Correction to: Preliminary insights into the population characteristics and distribution of reef (Mobula alfredi) and oceanic (M. birostris) manta rays in French Polynesia. Coral Reefs, 38(6), pp.1353–1353. doi:https://doi.org/10.1007/s00338-019-01862-0.
  • Carpentier, A.S., Berthe, C., Ender, I., Jaine, F.R.A., Mourier, J., Stevens, G., De Rosemont, M. and Clua, E. (2019b). Preliminary insights into the population characteristics and distribution of reef (Mobula alfredi) and oceanic (M. birostris) manta rays in French Polynesia. Coral Reefs, 38(6), pp.1197–1210. doi:https://doi.org/10.1007/s00338-019-01854-0.
  • Craig, J.R. (2019). A low cost 1-cm accuracy electronic fish measurement board. Fisheries Research, 210, pp.198–203. doi:https://doi.org/10.1016/j.fishres.2018.08.013.
  • Critchley, L.P. and Bishop, M.J. (2019). Differences in Soft-Sediment Infaunal Communities Between Shorelines with and Without Seawalls. Estuaries and Coasts, 42(4), pp.1127–1137. doi:https://doi.org/10.1007/s12237-019-00527-z.
  • D. Goodwin, I., Ribó, M. and Mortlock, T. (2020). Coastal sediment compartments, wave climate and centennial-scale sediment budget. Sandy Beach Morphodynamics, pp.615–640. doi:https://doi.org/10.1016/b978-0-08-102927-5.00025-4.
  • Darling, E.S., McClanahan, T.R., Maina, J., Gurney, G.G., Graham, N.A.J., Januchowski-Hartley, F., Cinner, J.E., Mora, C., Hicks, C.C., Maire, E., Puotinen, M., Skirving, W.J., Adjeroud, M., Ahmadia, G., Arthur, R., Bauman, A.G., Beger, M., Berumen, M.L., Bigot, L. and Bouwmeester, J. (2019). Social–environmental drivers inform strategic management of coral reefs in the Anthropocene. Nature Ecology & Evolution, 3(9), pp.1341–1350. doi:https://doi.org/10.1038/s41559-019-0953-8.
  • Davis, R.W., Bodkin, J.L., Coletti, H.A., Monson, D.H., Larson, S.E., Carswell, L.P. and Nichol, L.M. (2019). Future Directions in Sea Otter Research and Management. Frontiers in Marine Science, [online] 5. doi:https://doi.org/10.3389/fmars.2018.00510.
  • Deaker, D.J., Foo, S.A. and Byrne, M. (2019). Variability in egg and jelly-coat size and their contribution to target size for spermatozoa: a review for the Echinodermata. Marine and Freshwater Research, 70(7), p.995. doi:https://doi.org/10.1071/mf18134.
  • Dittami, S.M., Arboleda, E., Jean-Christophe Auguet, Bigalke, A., Briand, E., Paco Cárdenas, Cardini, U., Decelle, J., Engelen, A.H., Eveillard, D., Gachon, C., Griffiths, S.M., Harder, T., Kayal, E., Kazamia, E., Lallier, F.H., Medina, M., Marzinelli, E.M., Teresa Maria Morganti and Laura Núñez Pons (2019). A community perspective on the concept of marine holobionts: current status, challenges, and future directions. Plymouth Marine Science Electronic Archive (The Marine Biological Association (MBA), Plymouth Marine Laboratory (PML) and the Sir Alister Hardy Foundation for Ocean Science (SAHFOS).). doi:https://doi.org/10.7287/peerj.preprints.27519.
  • Djurichkovic, L.D., Donelson, J.M., Fowler, A.M., Feary, D.A. and Booth, D.J. (2019). The effects of water temperature on the juvenile performance of two tropical damselfishes expatriating to temperate reefs. Scientific Reports, [online] 9(1), p.13937. doi:https://doi.org/10.1038/s41598-019-50303-z.
  • Doane, M.P., Morris, M.M., Bhavya Papudeshi, Allen, L.B., Pande, D., Haggerty, J.M., Shaili Johri, Turnland, A., Peterson, M., Dovi Kacev, Nosal, A., Ramirez, D., Hovel, K.A., Ledbetter, J., Alker, A.T., Avalos, J., Baker, K., Bhide, S., Billings, E. and Byrum, S. (2019). The skin microbiome of elasmobranchs follows phylosymbosis, but in teleost fishes the microbiomes converge. Research Square (Research Square). doi:https://doi.org/10.21203/rs.2.19644/v1.
  • Domínguez-Tejo, E. and Metternicht, G. (2019). An ecosystem-based approach and Bayesian modelling to inform coastal planning: A case study of Manly, Australia. Environmental Science & Policy, 101, pp.72–86. doi:https://doi.org/10.1016/j.envsci.2019.07.019.
  • Duffy, J.E., Benedetti-Cecchi, L., Trinanes, J., Muller-Karger, F.E., Ambo-Rappe, R., Boström, C., Buschmann, A.H., Byrnes, J., Coles, R.G., Creed, J., Cullen-Unsworth, L.C., Diaz-Pulido, G., Duarte, C.M., Edgar, G.J., Fortes, M., Goni, G., Hu, C., Huang, X., Hurd, C.L. and Johnson, C. (2019). Toward a Coordinated Global Observing System for Seagrasses and Marine Macroalgae. Frontiers in Marine Science, 6. doi:https://doi.org/10.3389/fmars.2019.00317.
  • Ferguson, E.L. and Ferguson, B.G. (2019). High-precision acoustic localization of dolphin sonar click transmissions using a modified method of passive ranging by wavefront curvature. Journal of the Acoustical Society of America, 146(6), pp.4790–4801. doi:https://doi.org/10.1121/1.5138935.
  • Fernando Teran Arce, Bestley, S., Hindell, M.A., Harcourt, R. and Wotherspoon, S. (2019). A quantitative, hierarchical approach for detecting drift dives and tracking buoyancy changes in southern elephant seals. Scientific Reports, 9(1). doi:https://doi.org/10.1038/s41598-019-44970-1.
  • Figueira, W.F., Curley, B. and Booth, D.J. (2019). Can temperature-dependent predation rates regulate range expansion potential of tropical vagrant fishes? Marine Biology, 166(6). doi:https://doi.org/10.1007/s00227-019-3521-5.
  • Filippini, G., Bugnot, A.B., Johnston, E.L., Ruszczyk, J., Potts, J., Scanes, P., Ferguson, A., Ostrowski, M., Varkey, D. and Dafforn, K.A. (2019). Sediment bacterial communities associated with environmental factors in Intermittently Closed and Open Lakes and Lagoons (ICOLLs). Science of The Total Environment, 693, p.133462. doi:https://doi.org/10.1016/j.scitotenv.2019.07.268.
  • Fitzer, S.C., McGill, R.A.R., Torres Gabarda, S., Hughes, B., Dove, M., O’Connor, W. and Byrne, M. (2019). Selectively bred oysters can alter their biomineralization pathways, promoting resilience to environmental acidification. Global Change Biology, 25(12), pp.4105–4115. doi:https://doi.org/10.1111/gcb.14818.
  • Gorta, S.B.Z., Smith, J.A., Everett, J.D., Kingsford, R.T., Cornwell, W.K., Suthers, I.M., Epstein, H., McGovern, R., McLachlan, G., Roderick, M., Smith, L., Williams, D. and Callaghan, C.T. (2019). Pelagic citizen science data reveal declines of seabirds off south-eastern Australia. Biological Conservation, 235, pp.226–235. doi:https://doi.org/10.1016/j.biocon.2019.05.007.
  • Gribben, P.E., Angelini, C., Altieri, A.H., Bishop, M.J., Thomsen, M.S. and Bulleri, F. (2019). Facilitation Cascades in Marine Ecosystems: A Synthesis and Future Directions. Oceanography and Marine Biology, pp.127–168. doi:https://doi.org/10.1201/9780429026379-3.
  • Guyomard, D., Perry, C., Tournoux, P.U., Cliff, G., Peddemors, V. and Jaquemet, S. (2019). An innovative fishing gear to enhance the release of non-target species in coastal shark-control programs: The SMART (shark management alert in real-time) drumline. Fisheries Research, 216, pp.6–17. doi:https://doi.org/10.1016/j.fishres.2019.03.011.
  • Harcourt, R., Sequeira, A.M.M., Zhang, X., Roquet, F., Komatsu, K., Heupel, M., McMahon, C., Whoriskey, F., Meekan, M., Carroll, G., Brodie, S., Simpfendorfer, C., Hindell, M., Jonsen, I., Costa, D.P., Block, B., Muelbert, M., Woodward, B., Weise, M. and Aarestrup, K. (2019). Animal-Borne Telemetry: An Integral Component of the Ocean Observing Toolkit. Frontiers in Marine Science, 6. doi:https://doi.org/10.3389/fmars.2019.00326.
  • Harianto, J., Carey, N. and Byrne, M. (2019). respR—An R package for the manipulation and analysis of respirometry data. Methods in Ecology and Evolution, 10(6), pp.912–920. doi:https://doi.org/10.1111/2041-210x.13162.
  • Hays, G.C., Bailey, H., Bograd, S.J., Bowen, W.D., Campagna, C., Carmichael, R.H., Casale, P., Chiaradia, A., Costa, D.P., Cuevas, E., Nico de Bruyn, P.J., Dias, M.P., Duarte, C.M., Dunn, D.C., Dutton, P.H., Esteban, N., Friedlaender, A., Goetz, K.T., Godley, B.J. and Halpin, P.N. (2019). Translating Marine Animal Tracking Data into Conservation Policy and Management. Trends in Ecology & Evolution, [online] 34(5), pp.459–473. doi:https://doi.org/10.1016/j.tree.2019.01.009.
  • Henschke, N., Pakhomov, E.A., Kwong, L.E., Everett, J.D., Laiolo, L., Coghlan, A.R. and Suthers, I.M. (2019). Large Vertical Migrations of Pyrosoma atlanticum Play an Important Role in Active Carbon Transport. Journal of Geophysical Research: Biogeosciences, 124(5), pp.1056–1070. doi:https://doi.org/10.1029/2018jg004918.
  • Horning, M., Andrews, R.D., Bishop, A.M., Boveng, P.L., Costa, D.P., Crocker, D.E., Haulena, M., Hindell, M., Hindle, A.G., Holser, R.R., Hooker, S.K., Hückstädt, L.A., Johnson, S., Lea, M.-A., McDonald, B.I., McMahon, C.R., Robinson, P.W., Sattler, R.L., Shuert, C.R. and Steingass, S.M. (2019). Best practice recommendations for the use of external telemetry devices on pinnipeds. Animal Biotelemetry, [online] 7(1). doi:https://doi.org/10.1186/s40317-019-0182-6.
  • Hughes, J.M., Stewart, J. and Collins, D. (2019a). Experimental hyperbaric chamber trials reveal high resilience to barotrauma in Australian snapper (Chrysophrys auratus). Fisheries Research, 212, pp.172–182. doi:https://doi.org/10.1016/j.fishres.2018.12.024.
  • Hughes, J.M., Stewart, J. and Collins, D. (2019b). Simulated catch-and-release using experimental hyperbaric chamber trials reveal high levels of delayed mortality due to barotrauma in mulloway (Argyrosomus japonicus). Journal of Experimental Marine Biology and Ecology, 516, pp.89–102. doi:https://doi.org/10.1016/j.jembe.2019.05.001.
  • Jarvis, R.M. and Young, T. (2019). Key research priorities for the future of marine science in New Zealand. Marine Policy, 106, p.103539. doi:https://doi.org/10.1016/j.marpol.2019.103539.
  • Jay, R., Waltham, N.J., Huang, J., Teasdale, P.R. and King, B. (2019). Protecting Water Quality in Urban Estuaries: Australian Case Studies. Coasts and Estuaries. doi:https://doi.org/10.1016/b978-0-12-814003-1.00005-8.
  • Johri, S., Doane, M., Allen, L. and Dinsdale, E. (2019a). Taking Advantage of the Genomics Revolution for Monitoring and Conservation of Chondrichthyan Populations. Diversity, 11(4), p.49. doi:https://doi.org/10.3390/d11040049.
  • Junge, C., Donnellan, S.C., Huveneers, C., Bradshaw, C.J.A., Simon, A., Drew, M., Duffy, C., Johnson, G., Cliff, G., Braccini, M., Cutmore, S.C., Butcher, P., McAuley, R., Peddemors, V., Rogers, P. and Gillanders, B.M. (2019). Comparative population genomics confirms little population structure in two commercially targeted carcharhinid sharks. Marine Biology, 166(2). doi:https://doi.org/10.1007/s00227-018-3454-4.
  • Karelitz, S., Lamare, M.D., Mos, B., De Bari, H., Dworjanyn, S.A. and Byrne, M. (2019). Impact of growing up in a warmer, lower pH future on offspring performance: transgenerational plasticity in a pan-tropical sea urchin. Coral Reefs, 38(6), pp.1085–1095. doi:https://doi.org/10.1007/s00338-019-01855-z.
  • Kelaher, B., Peddemors, V., Hoade, B., Colefax, A. and Butcher, P. (2019). Comparison of sampling precision for nearshore marine wildlife using unmanned and manned aerial surveys. Journal of Unmanned Vehicle Systems, 8(1). doi:https://doi.org/10.1139/juvs-2018-0023.
  • Leuzinger, S., Borrelle, S.B. and Jarvis, R.M. (2019). Improving Climate-Change Literacy and Science Communication Through Smart Device Apps. Frontiers in Education, [online] 4. doi:https://doi.org/10.3389/feduc.2019.00138.
  • Levin, L.A., Bett, B.J., Gates, A.R., Heimbach, P., Howe, B.M., Janssen, F., McCurdy, A., Ruhl, H.A., Snelgrove, P., Stocks, K.I., Bailey, D., Baumann-Pickering, S., Beaverson, C., Benfield, M.C., Booth, D.J., Carreiro-Silva, M., Colaço, A., Eblé, M.C., Fowler, A.M. and Gjerde, K.M. (2019). Global Observing Needs in the Deep Ocean. Frontiers in Marine Science, 6. doi:https://doi.org/10.3389/fmars.2019.00241.
  • Linklater, M., Ingleton, T.C., Kinsela, M.A., Morris, B.D., Allen, K.M., Sutherland, M.D. and Hanslow, D.J. (2019). Techniques for Classifying Seabed Morphology and Composition on a Subtropical-Temperate Continental Shelf. Geosciences, 9(3), p.141. doi:https://doi.org/10.3390/geosciences9030141.
  • Longford, S.R., Campbell, A.H., Nielsen, S., Case, R.J., Kjelleberg, S. and Steinberg, P.D. (2019). Interactions within the microbiome alter microbial interactions with host chemical defences and affect disease in a marine holobiont. Scientific Reports, 9(1). doi:https://doi.org/10.1038/s41598-018-37062-z.
  • Macolino, A.C., Dafforn, K.A., Hedge, L.H., Poore, A.G.B. and Johnston, E.L. (2019). Fine-Scale Effects of Boat Moorings on Soft Sediment Communities Masked in Large-Scale Comparisons. Frontiers in Marine Science, 6. doi:https://doi.org/10.3389/fmars.2019.00101.
  • McDonald, J., McGee, J., Brent, K. and Burns, W. (2019). Governing geoengineering research for the Great Barrier Reef. Climate Policy, 19(7), pp.801–811. doi:https://doi.org/10.1080/14693062.2019.1592742.
  • McGeoch, M.A., Latombe, G., Andrew, N.R., Nakagawa, S., Nipperess, D.A., Roigé, M., Marzinelli, E.M., Campbell, A.H., Vergés, A., Thomas, T., Steinberg, P.D., Selwood, K.E., Henriksen, M.V. and Hui, C. (2019). Measuring continuous compositional change using decline and decay in zeta diversity. Ecology, 100(11). doi:https://doi.org/10.1002/ecy.2832.
  • McMahon, C.R., Hindell, M.A., Charrassin, J.-B., Corney, S., Guinet, C., Harcourt, R., Jonsen, I., Trebilco, R., Williams, G. and Bestley, S. (2019). Finding mesopelagic prey in a changing Southern Ocean. Scientific Reports, 9(1). doi:https://doi.org/10.1038/s41598-019-55152-4.
  • Miranda, T., Smith, J.A., Suthers, I.M., Mazumder, D., Cruz, D.O., Schilling, H.T., Searle, K. and Vergés, A. (2019). Convictfish on the move: variation in growth and trophic niche space along a latitudinal gradient. Ices Journal of Marine Science, 76(7), pp.2404–2412. doi:https://doi.org/10.1093/icesjms/fsz098.
  • Murray, S.A., Ruvindy, R., Kohli, G.S., Anderson, D.M. and Brosnahan, M.L. (2019). Evaluation of sxtA and rDNA qPCR assays through monitoring of an inshore bloom of Alexandrium catenella Group 1. Scientific Reports, [online] 9(1), p.14532. doi:https://doi.org/10.1038/s41598-019-51074-3.
  • O’Brien, A.L., Dafforn, K.A., Chariton, A.A., Johnston, E.L. and Mayer-Pinto, M. (2019). After decades of stressor research in urban estuarine ecosystems the focus is still on single stressors: A systematic literature review and meta-analysis. Science of The Total Environment, 684, pp.753–764. doi:https://doi.org/10.1016/j.scitotenv.2019.02.131.
  • Pannell, J.L., Amrit Melissa Dencer-Brown, Greening, S.S., Hume, E.A., Jarvis, R.M., Mathieu, C., Mugford, J. and Rogini Runghen (2019). An early career perspective on encouraging collaborative and interdisciplinary research in ecology. Ecosphere, 10(10). doi:https://doi.org/10.1002/ecs2.2899.
  • Peng, C., Duarte, C.M., Costa, D.P., Christophe Guinet, Harcourt, R., Hindell, M.A., McMahon, C.R., Mônica M. C. Muelbert, Thums, M., Wong, K.-C. and Zhang, X. (2019). Deep Learning Resolves Representative Movement Patterns in a Marine Predator Species. Applied sciences, 9(14), pp.2935–2935. doi:https://doi.org/10.3390/app9142935.
  • Pirog, A., Ravigné, V., Fontaine, M.C., Rieux, A., Gilabert, A., Cliff, G., Clua, E., Daly, R., Heithaus, M.R., Kiszka, J.J., Matich, P., Nevill, J.E.G., Smoothey, A.F., Temple, A.J., Berggren, P., Jaquemet, S. and Magalon, H. (2019). Population structure, connectivity, and demographic history of an apex marine predator, the bull sharkCarcharhinus leucas. Ecology and Evolution, 9(23), pp.12980–13000. doi:https://doi.org/10.1002/ece3.5597.
  • Qiu, Z., Coleman, M.A., Provost, E., Campbell, A.H., Kelaher, B.P., Dalton, S.J., Thomas, T., Steinberg, P.D. and Marzinelli, E.M. (2019). Future climate change is predicted to affect the microbiome and condition of habitat-forming kelp. Proceedings of the Royal Society B: Biological Sciences, 286(1896), p.20181887. doi:https://doi.org/10.1098/rspb.2018.1887.
  • Raoult, V., Broadhurst, M.K., Peddemors, V.M., Williamson, J.E. and Gaston, T.F. (2019a). Resource use of great hammerhead sharks ( Sphyrna mokarran ) off eastern Australia. Journal of Fish Biology, 95(6), pp.1430–1440. doi:https://doi.org/10.1111/jfb.14160.
  • Raoult, V., Williamson, J.E., Smith, T.M. and Gaston, T.F. (2019b). Effects of on-deck holding conditions and air exposure on post-release behaviours of sharks revealed by a remote operated vehicle. Journal of Experimental Marine Biology and Ecology, 511, pp.10–18. doi:https://doi.org/10.1016/j.jembe.2018.11.003.
  • Ricardo De Paoli-Iseppi, Deagle, B.E., Polanowski, A.M., Harcourt, R., Dickinson, J.L., Hindell, M.A. and Jarman, S.N. (2019). Age estimation in a long‐lived seabird ( Ardenna tenuirostris ) using DNA methylation‐based biomarkers. Molecular Ecology Resources, 19(2), pp.411–425. doi:https://doi.org/10.1111/1755-0998.12981.
  • Rogers, A.D., Frinault, B.A.V., Barnes, D.K.A., Bindoff, N.L., Downie, R., Ducklow, H.W., Friedlaender, A.S., Hart, T., Hill, S.L., Hofmann, E.E., Linse, K., McMahon, C.R., Murphy, E.J., Pakhomov, E.A., Reygondeau, G., Staniland, I.J., Wolf-Gladrow, D.A. and Wright, R.M. (2020). Antarctic Futures: An Assessment of Climate-Driven Changes in Ecosystem Structure, Function, and Service Provisioning in the Southern Ocean. Annual Review of Marine Science, 12(1), pp.87–120. doi:https://doi.org/10.1146/annurev-marine-010419-011028.
  • Schaefer, N., Dafforn, K.A., Johnston, E.L. and Mayer-Pinto, M. (2019a). Corrigendum to: Size, depth and position affect the diversity and structure of rock pool communities in an urban estuary. Marine and Freshwater Research, 70(7), p.1045. doi:https://doi.org/10.1071/mf18074_co.
  • Schaefer, N., Dafforn, K.A., Johnston, E.L. and Mayer-Pinto, M. (2019b). Size, depth and position affect the diversity and structure of rock pool communities in an urban estuary. Marine and Freshwater Research, [online] 70(7), p.1034. doi:https://doi.org/10.1071/mf18074.
  • Schilling, H.T., Smith, J.A., Stewart, J., Everett, J.D., Hughes, J.M. and Suthers, I.M. (2019). Reduced exploitation is associated with an altered sex ratio and larger length at maturity in southwest Pacific (east Australian) Pomatomus saltatrix. Marine Environmental Research, 147, pp.72–79. doi:https://doi.org/10.1016/j.marenvres.2019.02.012.
  • Seebacher, F. and Simmonds, A.I.M. (2019). Histone deacetylase activity mediates thermal plasticity in zebrafish (Danio rerio). Scientific Reports, 9(1). doi:https://doi.org/10.1038/s41598-019-44726-x.
  • Sequeira, A.M.M., Heupel, M.R., Lea, M. ‐A., Eguíluz, V.M., Duarte, C.M., Meekan, M.G., Thums, M., Calich, H.J., Carmichael, R.H., Costa, D.P., Ferreira, L.C., Fernandéz‐Gracia, J., Harcourt, R., Harrison, A. ‐L., Jonsen, I., McMahon, C.R., Sims, D.W., Wilson, R.P. and Hays, G.C. (2019). The importance of sample size in marine megafauna tagging studies. Ecological Applications, 29(6). doi:https://doi.org/10.1002/eap.1947.
  • Shaili Johri, Fellows, S.R., Solanki, J., Busch, A., Livingston, I., Mora, M.F., Tiwari, A., Goodman, A.Z., Cantu, A., Doane, M.P., Morris, M.M., Edwards, R.A. and Dinsdale, E.A. (2019b). Genomics to aid species delimitation and effective conservation of the Sharpnose Guitarfish (Glaucostegus granulatus). BioRxiv. doi:https://doi.org/10.1101/767186.
  • Simpson, M., Morris, R.L., Harasti, D. and Coleman, R.A. (2019). The endangered White’s seahorse Hippocampus whitei chooses artificial over natural habitats. Journal of Fish Biology, 95(2), pp.555–561. doi:https://doi.org/10.1111/jfb.14002.
  • Smith, J.A., Eyre, B.D., Rosentreter, J.A. and Taylor, M.D. (2019a). Modelling estuarine stocking density for crustaceans using net ecosystem metabolism. Bulletin of Marine Science, 95(2), pp.217–238. doi:https://doi.org/10.5343/bms.2018.0047.
  • Smith, K.E., Byrne, M., Deaker, D., Hird, C.M., Nielson, C., Wilson-McNeal, A. and Lewis, C. (2019b). Sea urchin reproductive performance in a changing ocean: poor males improve while good males worsen in response to ocean acidification. Proceedings of the Royal Society B: Biological Sciences, 286(1907), p.20190785. doi:https://doi.org/10.1098/rspb.2019.0785.
  • Smoothey, A.F., Lee, K.A. and Peddemors, V.M. (2019). Long-term patterns of abundance, residency and movements of bull sharks (Carcharhinus leucas) in Sydney Harbour, Australia. Scientific Reports, 9(1). doi:https://doi.org/10.1038/s41598-019-54365-x.
  • Strain, E.M.A., Morris, R.L., Coleman, R.A., Figueira, W.F., Steinberg, P.D., Johnston, E.L. and Bishop, M.J. (2019). Corrigendum to ‘Increasing microhabitat complexity on seawalls can reduce fish predation on native oysters’ [Ecol. Eng. 120 (2018) 637–644]. Ecological Engineering, 131, p.135. doi:https://doi.org/10.1016/j.ecoleng.2019.02.005.
  • Trevathan-Tackett, S.M., Sherman, C.D.H., Huggett, M.J., Campbell, A.H., Laverock, B., Hurtado-McCormick, V., Seymour, J.R., Firl, A., Messer, L.F., Ainsworth, T.D., Negandhi, K.L., Daffonchio, D., Egan, S., Engelen, A.H., Fusi, M., Thomas, T., Vann, L., Hernandez-Agreda, A., Gan, H.M. and Marzinelli, E.M. (2019). A horizon scan of priorities for coastal marine microbiome research. Nature Ecology & Evolution, 3(11), pp.1509–1520. doi:https://doi.org/10.1038/s41559-019-0999-7.
  • Tulloch, V., Pirotta, V., Grech, A., Crocetti, S., Double, M., How, J., Kemper, C., Meager, J., Peddemors, V., Waples, K., Watson, M. and Harcourt, R. (2019). Long-term trends and a risk analysis of cetacean entanglements and bycatch in fisheries gear in Australian waters. Biodiversity and Conservation, 29(1), pp.251–282. doi:https://doi.org/10.1007/s10531-019-01881-x.
  • Ushiama, S., Mayer-Pinto, M., Bugnot, A.B., Johnston, E.L. and Dafforn, K.A. (2019). Eco-engineering increases habitat availability and utilisation of seawalls by fish. Ecological Engineering, 138, pp.403–411. doi:https://doi.org/10.1016/j.ecoleng.2019.07.022.
  • Valdor, P.F., Gómez, A.G., Juanes, J.A., Kerléguer, C., Steinberg, P., Tanner, E., MacLeod, C., Knights, A.M., Seitz, R.D., Airoldi, L., Firth, L.B., Crowe, T., Chatzinikolaou, E., Smith, A., Arvanitidis, C., Burt, J.A., Brooks, P.R., Ponti, M., Soares-Gomes, A. and Ovejero, A. (2019). A global atlas of the environmental risk of marinas on water quality. Marine Pollution Bulletin, [online] 149, p.110661. doi:https://doi.org/10.1016/j.marpolbul.2019.110661.
  • Vergés, A., McCosker, E., Mayer‐Pinto, M., Coleman, M.A., Wernberg, T., Ainsworth, T. and Steinberg, P.D. (2019). Tropicalisation of temperate reefs: Implications for ecosystem functions and management actions. Functional Ecology, 33(6). doi:https://doi.org/10.1111/1365-2435.13310.
  • Verma, A., Kazandjian, A., Chowdhury Sarowar, D. Tim Harwood, J. Sam Murray, Insa Pargmann, Hoppenrath, M. and Murray, S.A. (2019). Morphology and Phylogenetics of Benthic Prorocentrum Species (Dinophyceae) from Tropical Northwestern Australia. Toxins, 11(10), pp.571–571. doi:https://doi.org/10.3390/toxins11100571.
  • Vila Pouca, C. and Brown, C. (2019). Lack of social preference between unfamiliar and familiar juvenile Port Jackson sharks Heterodontus portusjacksoni. Journal of Fish Biology, 95(2). doi:https://doi.org/10.1111/jfb.13982.
  • Vila Pouca, C., Gervais, C., Reed, J., Michard, J. and Brown, C. (2019). Quantity discrimination in Port Jackson sharks incubated under elevated temperatures. Behavioral Ecology and Sociobiology, [online] 73(7). doi:https://doi.org/10.1007/s00265-019-2706-8.
  • Voerman, S.E., Glasby, T.M., Gladstone, W. and Gribben, P.E. (2019). Morphological variation of a rapidly spreading native macroalga across a range of spatial scales and its tolerance to sedimentation. Marine Environmental Research, 147, pp.149–158. doi:https://doi.org/10.1016/j.marenvres.2019.02.017.
  • Wernberg, T., Coleman, M.A., Babcock, R.C., Bell, S.Y., Bolton, J.J., Connell, S.D., Hurd, C.L., Johnson, C.R., Marzinelli, E.M., Shears, N.T., Steinberg, P.D., Thomsen, M.S., Vanderklift, M.A., Vergés, A. and Wright, J.T. (2019). Biology and Ecology of the Globally Significant Kelp Ecklonia radiata. Oceanography and Marine Biology, pp.265–323. doi:https://doi.org/10.1201/9780429026379-6.
  • Wood, G., Marzinelli, E.M., Coleman, M.A., Campbell, A.H., Santini, N.S., Kajlich, L., Verdura, J., Wodak, J., Steinberg, P.D. and Vergés, A. (2019). Restoring subtidal marine macrophytes in the Anthropocene: trajectories and future-proofing. Marine and Freshwater Research, 70(7), p.936. doi:https://doi.org/10.1071/mf18226.
  • Woodings, L.N., Murphy, N.P., Jeffs, A., Suthers, I.M., Liggins, G.W. and Strugnell, J.M. (2019). Distribution of Palinuridae and Scyllaridae phyllosoma larvae within the East Australian Current: a climate change hot spot. Marine and Freshwater Research, 70(7), p.1020. doi:https://doi.org/10.1071/mf18331.
  • Xiao, Z., Wang, X.H., Roughan, M. and Harrison, D. (2019). Numerical modelling of the Sydney Harbour Estuary, New South Wales: Lateral circulation and asymmetric vertical mixing. Estuarine, Coastal and Shelf Science, 217, pp.132–147. doi:https://doi.org/10.1016/j.ecss.2018.11.004.
  • Young, H.J., Raoult, V., Platell, M.E., Williamson, J.E. and Gaston, T.F. (2019). Within-genus differences in catchability of elasmobranchs during trawling. Fisheries Research, 211, pp.141–147. doi:https://doi.org/10.1016/j.fishres.2018.11.015.

  • Agüera, A., & Byrne, M. (2018). A dynamic energy budget model to describe the reproduction and growth of invasive starfish Asterias amurensis in southeast Australia. Biological Invasions.
  • Bugnot, A., Hose, G., Walsh, C., Floerl, O., French, K., & Dafforn, K. et al. (2018). Urban impacts across realms: Making the case for inter-realm monitoring and management. Science of The Total Environment, 648, 711-719. doi: 10.1016/j.scitotenv.2018.08.134
  • Brodie, S., Lédée, E., Heupel, M., Babcock, R., Campbell, H., & Gledhill, D. et al. (2018). Continental-scale animal tracking reveals functional movement classes across marine taxa. Scientific Reports, 8(1).
    Chan, K., Sewell, M., & Byrne, M. (2018). Revisiting the larval dispersal black box in the Anthropocene. ICES Journal of Marine Science. doi: 10.1093/icesjms/fsy097
  • Couturier, L., Newman, P., Jaine, F., Bennett, M., Venables, WN., Cagua, EF., Townsend, K., Weeks, S., Richardson, A. (2018). Variation in occupancy and habitat use of Mobula alfredi at a major aggregation site. Marine Ecology Progress Series, 599, 125-145, doi:10.3354/meps12610
  • Espinel-Velasco, N., Hoffmann, L., Agüera, A., Byrne, M., Dupont, S., & Uthicke, S. et al. (2018). Effects of ocean acidification on the settlement and metamorphosis of marine invertebrate and fish larvae: a review. Marine Ecology Progress Series, 606, 237-257. doi: 10.3354/meps12754
  • Foo, S., Deaker, D., & Byrne, M. (2018). Cherchez la femme – impact of ocean acidification on the egg jelly coat and attractants for sperm. The Journal of Experimental Biology, 221(13), jeb177188. doi: 10.1242/jeb.177188
  • Heery, E., Dafforn, K., Smith, J., Ushiama, S., & Mayer-Pinto, M. (2018). Not all artificial structures are created equal: Pilings linked to greater ecological and environmental change in sediment communities than seawalls. Marine Environmental Research, 142, 286-294. http://dx.doi: 10.1016/j.marenvres.2018.08.012
  • Hoenner, X., Huveneers, C., Steckenreuter, A., Simpfendorfer, C., Tattersall, K., & Jaine, F. et al. (2018). Australia’s continental-scale acoustic tracking database and its automated quality control process. Scientific Data, 5, 170206. http://dx.doi.org/10.1038/sdata.2017.206
  • Kienker, S., Coleman, R., Morris, R., Steinberg, P., Bollard, B., & Jarvis, R. et al. (2018). Bringing harbours alive: Assessing the importance of eco-engineered coastal infrastructure for different stakeholders and cities. Marine Policy, 94, 238-246. doi: 10.1016/j.marpol.2018.04.028
  • Lachnit, T., Dafforn, K., Johnston, E., & Steinberg, P. (2018). Contrasting distributions of bacteriophages and eukaryotic viruses from contaminated coastal sediments. Environmental Microbiology. http://dx.doi: 10.1111/1462-2920.14340
  • Lamare, M., Harianto, J., Uthicke, S., Agüera, A., Karelitz, S., & Pecorino, D. et al. (2018). Larval thermal windows in native and hybrid Pseudoboletia progeny (Echinoidea) as potential drivers of the hybridization zone. Marine Ecology Progress Series, 598, 99-112. doi: 10.3354/meps12601
  • Lawson, C., Suthers, I., Smith, J., Schilling, H., Stewart, J., Hughes, J., & Brodie, S. (2018). The influence of ontogenetic diet variation on consumption rate estimates: a marine example. Scientific Reports, 8(1). http://dx.doi: 10.1038/s41598-018-28479-7
  • Lee, K., Roughan, M., Harcourt, R., & Peddemors, V. (2018). Environmental correlates of relative abundance of potentially dangerous sharks in nearshore areas of southeastern Australia. Marine Ecology Progress Series, 599, 157-179. https://doi.org/10.3354/meps12611
  • Martino, C., Costa, C., Roccheri, M., Koop, D., Scudiero, R., & Byrne, M. (2018). Gadolinium perturbs expression of skeletogenic genes, calcium uptake and larval development in phylogenetically distant sea urchin species. Aquatic Toxicology, 194, 57-66. http://dx.doi.org/10.1016/j.aquatox.2017.11.004
  • Marzinelli, E., Qiu, Z., Dafforn, K., Johnston, E., Steinberg, P., & Mayer-Pinto, M. (2018). Coastal urbanisation affects microbial communities on a dominant marine holobiont. Npj Biofilms and Microbiomes, 4(1). http://dx.doi.org/10.1038/s41522-017-0044-z
  •  Pauthenet, E., Roquet, F., Madec, G., Guinet, C., Hindell, MA., McMahon, C., Harcourt, R., Nerini, D. (2018). Seasonal meandering of the Polar Front upstream of the Kerguelen Plateau, Geophysical Research Letters, 45 (18), 9774-9781, doi:10.1029/2018GL079614
  • Porter, A., Ferrari, R., Kelaher, B., Smith, S., Coleman, R., Byrne, M., & Figueira, W. (2018). Marine infrastructure supports abundant, diverse fish assemblages at the expense of beta diversity. Marine Biology, 165(7). doi: 10.1007/s00227-018-3369-0
  • Rohner, C., Richardson, A., Jaine, F., Bennett, M., Weeks, S., & Cliff, G. et al. (2018). Satellite tagging highlights the importance of productive Mozambican coastal waters to the ecology and conservation of whale sharks. Peerj, 6, e4161. doi: 10.7717/peerj.4161
    Rowe, C., Figueira, W., Raubenheimer, D., Solon-Biet, S., & Machovsky-Capuska, G. (2018). Effects of temperature on macronutrient selection, metabolic and swimming performance of the Indo-Pacific Damselfish (Abudefduf vaigiensis). Marine Biology, 165(11). http://dx.doi: 10.1007/s00227-018-3435-7
  • Schilling, H., Reis-Santos, P., Hughes, J., Smith, J., Everett, J., & Stewart, J. et al. (2018). Evaluating estuarine nursery use and life history patterns of Pomatomus saltatrix in eastern Australia. Marine Ecology Progress Series. http://dx.doi.org/10.3354/meps12495
  • Sequeira, A., Rodriguez, J., Eguiluz, V., Harcourt, R., Hindell, MA., Sims, DW., Duarte, CM., Costa, D., Fernandez-Gracia, J., Ferreira, LC., Hays, GC., Heupel, M., Meekan, MG., et, al. (2018). Convergence of marine megafauna movement patterns in coastal and open oceans, Proceedings of the National Academy of Sciences of the United States of America, 115 (12), 3072-3077. doi:10.1073/pnas.1716137115
  • Stewart, J.D., Jaine, F.R., Armstrong, A.O., Bennett, M.B., Burgess, K.B., Stevens, G.M., et al. (2018) Research priorities to support effective manta and devil ray conservation. Frontiers in Marine Science, 5 (314), 1-27. https://doi.org/10.3389/fmars.2018.00314
  • Turnbull, J., Shah Esmaeili, Y., Clark, G., Figueira, W., Johnston, E., & Ferrari, R. (2018). Key drivers of effectiveness in small marine protected areas. Biodiversity and Conservation. http://dx.doi.org/10.1007/s10531-018-1532-z Udyawer, V., Dwyer, R., Hoenner, X., Babcock, R., Brodie, S.,Taylor, M., et al. (2018). A standardised framework for analysing detection data from automated tracking arrays. Animal Biotelemetry, 6(1). doi: 10.1186/s40317-018-0162-2
  • Waltham, N., & Dafforn, K. (2018). Ecological engineering in the coastal seascape. Ecological Engineering, 120, 554-559. http:dx.doi: 10.1016/j.ecoleng.2018.07.028
  • Beck, H., Feary, D., Nakamura, Y., & Booth, D. (2017). Temperate macroalgae impacts tropical fish recruitment at forefronts of range expansion. Coral Reefs, 36(2), 639-651. http://dx.doi.org/10.1007/s00338-017-1553-1.
  • Dafforn, K. (in press). Eco-engineering and management strategies for marine infrastructure to reduce establishment and dispersal of non-indigenous species. Management Of Biological Invasions, 8(2), 153-161. http://dx.doi.org/10.3391/mbi.2017.8.2.03.
  • Everett, J., van Sebille, E., Taylor, M., Suthers, I., Setio, C., Cetina-Heredia, P., & Smith, J. (2017). Dispersal of Eastern King Prawn larvae in a western boundary current: New insights from particle tracking. Fisheries Oceanography. http://dx.doi.org/10.1111/fog.12213.
  • Harrison, D. (2017). Global negative emissions capacity of ocean macronutrient fertilization. Environmental Research Letters, 12(3), 035001. http://dx.doi.org/10.1088/1748-9326/aa5ef5.
  • Heery, E., Bishop, M., Critchley, L., Bugnot, A., Airoldi, L., & Mayer-Pinto, M. et al. (2017). Identifying the consequences of ocean sprawl for sedimentary habitats. Journal of Experimental Marine Biology and Ecology, 492, 31-48. http://dx.doi.org/10.1016/j.jembe.2017.01.020.
  • Kohli, G., Haslauer, K., Sarowar, C., Kretzschmar, A., Boulter, M., & Harwood, D. et al. (2017). Qualitative and quantitative assessment of the presence of ciguatoxin, P-CTX-1B, in Spanish Mackerel ( Scomberomorus commerson ) from waters in New South Wales (Australia). Toxicology Reports, 4, 328-334. http://dx.doi.org/10.1016/j.toxrep.2017.06.006.
  • Lawes, J., Dafforn, K., Clark, G., Brown, M., & Johnston, E. (in press). Multiple stressors in sediments impact adjacent hard substrate habitats and across biological domains. Science of The Total Environment, 592, 295-305. http://dx.doi.org/10.1016/j.scitotenv.2017.03.083.
  • Levin, R., Suggett, D., Nitschke, M., van Oppen, M., & Steinberg, P. (2017). Expanding the Symbiodinium (Dinophyceae, Suessiales) Toolkit Through Protoplast Technology. Journal Of Eukaryotic Microbiology, 64(5), 588-597. http://dx.doi.org/10.1111/jeu.12393.
  • Levin, R., Voolstra, C., Agrawal, S., Steinberg, P., Suggett, D., & van Oppen, M. (2017). Engineering Strategies to Decode and Enhance the Genomes of Coral Symbionts. Frontiers In Microbiology, 8. http://dx.doi.org/10.3389/fmicb.2017.01220.
  • Puritz, J., Keever, C., Addison, J., Barbosa, S., Byrne, M., & Hart, M. et al. (2017). Life-history predicts past and present population connectivity in two sympatric sea stars. Ecology and Evolution, 7(11), 3916-3930. http://dx.doi.org/10.1002/ece3.29.
  • Ainley LB, Vergés A, Bishop MJ (in press) Congruence of intraspecific variability in leaf traits for two co-occurring estuarine angiosperms. Oecologia (accepted, 8 April, 2016)
  • Armansin, N., Lee, K., Huveneers, C., Harcourt, R. 2016. Integrating social network analysis and fine-scale positioning to characterise the associations of a benthic shark. Animal Behaviour 115 (2016) 245e258.
  • Bain KF and Poore AGB. 2016. Use of near infrared reflectance spectroscopy (NIRS) to quantify diet mixing in a marine generalist herbivore. Marine Biology 163: 79.
  • Baird DJ; Van Den Brink PJ; Chariton AA; Dafforn KA; Johnston EL, 2016, ‘New diagnostics for multiply stressed marine and freshwater ecosystems: Integrating models, ecoinformatics and big data’, Marine and Freshwater Research, vol. 67, no. 4, pp. 391 – 392, http://dx.doi.org/10.1071/MF15330
  • Banks JL; Hutchings P; Curley B; Hedge L; Creese B; Johnston E, 2016, ‘Biodiversity conservation in Sydney Harbour’, Pacific Conservation Biology, vol. 22, no. 2, pp. 98 – 109,http://dx.doi.org/10.1071/PC15048
  • Bishop MJ, Mayer-Pinto M, Airoldi L, Firth LB, Morris RL, Loke LHL, Hawkins SJ, Naylor LA, Coleman RA, Chee SY, Dafforn KA (in press) Effects of ocean sprawl on ecological connectivity: impacts and solutions. J Exp Mar Biol Ecol (accepted, 29 May, 2016) Invited review
  • Bugnot AB, Coleman RA, Figueira WF & Marzinelli EM (2016) Effects of the receiving assemblage and disturbance on the colonisation of an invasive species. Marine Biology In press (accepted 31/05/2016)
  • Dafforn KA; Johnston EL; Ferguson A; Humphrey CL; Monk W; Nichols SJ; Simpson SL; Tulbure MG; Baird DJ, 2016, ‘Big data opportunities and challenges for assessing multiple stressors across scales in aquatic ecosystems’, Marine and Freshwater Research, vol. 67, no. 4, pp. 393 – 413,http://dx.doi.org/10.1071/MF15108
  • Domínguez-Tejo E; Metternicht G; Johnston E; Hedge L, 2016, ‘Marine Spatial Planning advancing the Ecosystem-Based Approach to coastal zone management: A review’, Marine Policy, vol. 72, pp. 115 – 130, http://dx.doi.org/10.1016/j.marpol.2016.06.023
  • Edge KJ; Johnston EL; Dafforn KA; Simpson SL; Kutti T; Bannister RJ, 2016, ‘Sub-lethal effects of water-based drilling muds on the deep-water sponge Geodia barretti’, Environmental Pollution, vol. 212, pp. 525
  • Evans SM, Sinclair E, Poore AGB, Bain KF, Vergés A. 2016. Genotypic richness predicts phenotypic variation in an endangered clonal plant. PeerJ 4:e1633. 534, http://dx.doi.org/10.1016/j.envpol.2016.02.047
  • Flood M, Stobutzki I, Andrews J, Ashby C, Begg G, Fletcher R, Gardner C, Georgeson L, Hansen S, Hartmann K, Hone P, Larcombe J, Maloney L, Moore A, Roach J, Roelofs A, Sainsbury K, Saunders T, Sloan S, Smith T, Stewart J, Wise B (2016). Multijurisdictional fisheries performance reporting: how Australia’s nationally standardised approach to assessing stock status compares. Fisheries Research – In Press
  • Hughes LE and Poore AGB. 2016. Biancolina japonica Ishimaru 1996: first record of this burrowing amphipod from Australia and a review of host use in the genus Biancolina (Amphipoda: Peracarida: Crustacea). Marine Biodiversity Records 9:32.
  • Hughes, J.M., Rowland, A.J., Stewart, J., Gill, H.S. (2016). Discovery of a specialised anatomical structure in some physoclistous carangid fishes which permits rapid ascent without barotrauma. Marine Biology.
  • Hughes, J.M., Stewart, J., Gillanders, B.M., Collins, D., & Suthers, I.M. (2016). Relationship between otolith chemistry and age in a widespread pelagic teleost Arripis trutta: influence of adult movements on stock structure and implications for management. Marine and Freshwater Research.
  • Gonçalves P, Anderson KA, Thompson EL, Melwani AR, Parker L, Ross PM, Raftos DA. 2016. Rapid transcriptional acclimation following transgenerational exposure of oysters to ocean acidification. Molecular Ecology. In Press.
  • Green TJ, Chataway T, Melwani AR, Raftos DA. 2016. Proteomic analysis of hemolymph from poly(I:C)-stimulated Crassostrea gigas. Fish & Shellfish Immunology 48: 39-42
  • Hays GC, Ferreira LC, Sequeira AMM, Meekan MG, Duarte CM, Bailey H, Bailleul F, Bowen WD, Cayley MJ, Costa DP, Eguiluz VM, Fossette S, Friedlaender AS, Gales N, Gleiss AC, Gunn J, Harcourt R, Hazen E, Heithaus MR, Heupel M, Holland K, Horning M, Jonsen I, Kooyman G, Lowe CG, Madsen PT, Marsh H, Phillips R, Righton D, Ropert- Coudert Y, Sato K, Shaffer S, Simpfendorfer CA, Sims DW, Skomal G, Takahashi A, Trathan PN, Wikelski M, Womble J, Thums M. 2016. Key questions in marine megafauna movement ecology. Trends in Ecology and Evolution DOI: 10.1016/j.tree.2016.02.015
  • Heery HC, Bishop MJ, Critchley L, Bugnot AB, Airoldi L, Mayer-Pinto M, Sheehan EV, Coleman RA, Loke LHL, Johnston EJ, Komyakova V, Morris RL, Strain EMA, Naylor LA, Dafforn KA (in press) Identifying the consequences of ocean sprawl for sedimentary habitats. J Exp Mar Biol Ecol (accepted, 29 May, 2016) Invited review
  • Henschke N, JD Everett, A Richardson, IM Suthers. 2016. Rethinking the role of salps in the ocean. Trends in Ecology and Evolution. 14 June 2016
  • Henschke N, JD Everett, IM Suthers. 2016. An observation of two oceanic salp swarms in the Tasman Sea: Thetys vagina and Cyclosalpa affinis. Marine Biodiversity Records in press.
  • Hindell, M.A., McMahon, C.R., Bester, M.N., Boehme, L., Costa, D., Fedak, M.A., Guinet, C., Herraiz-Borreguero, L., Harcourt, R.G., Huckstadt, L., Kovacs, K., M., Lydersen, C., McIntyre, T., Muelbert, M.M.C., Patterson, T., Roquet, F., Williams, G. & Charrassin, J.B. 2016. Circumpolar habitat use in the southern elephant seal: implications for foraging success and population trajectories. Ecosphere 7(5):e01213. 10.1002/ecs2.1213
  • Hughes JM, Stewart J, Gillanders BM, Collins D and Suthers IM. 2016. Relationship between otolith chemistry and age in a widespread pelagic teleost Arripis trutta: influence of adult movements on stock structure and implications for management. Marine & Freshwater Research 67: 224-237
  • Huveneers, C., Simpfendorfer, Colin; Kim, S., Semmens, J., Hobday, A., Pederson, H., Stieglitz, T., Vallee, R., Webber, D., Heupel, M., Peddemors, V., Harcourt, R. 2016. The influence of environmental parameters on the performance and detection range of acoustic receivers. Methods in Ecology and Evolution. DOI: 10.1111/2041-210X.12520.
  • Keller K, AS Steffe, M Lowry, JJ Murphy and IM Suthers. 2016. Monitoring boat-based recreational fishing effort at a nearshore artificial reef with a shore-based camera. Fisheries Research: 181: 84-92.
  • Lawes JC; Clark GF; Johnston EL, 2016, ‘Contaminant cocktails: Interactive effects of fertiliser and copper paint on marine invertebrate recruitment and mortality’, Marine Pollution Bulletin, vol. 102, no. 1, pp. 148 – 159, http://dx.doi.org/10.1016/j.marpolbul.2015.11.040
  • Lawes JC; Neilan BA; Brown MV; Clark GF; Johnston EL, 2016, ‘Elevated nutrients change bacterial community composition and connectivity: high throughput sequencing of young marine biofilms’,Biofouling: the journal of bioadhesion and biofilm research, vol. 32, no. 1, pp. 57 – 69,http://dx.doi.org/10.1080/08927014.2015.1126581
  • Masood M, Raftos DA, Nair SV. 2016 Two oyster species that show differential susceptibility to virus infection also show differential proteomic responses to generic dsRNA. Journal of Proteome Research. 15(6):1735-46.
  • Melwani AR, Thompson EL, Raftos DA. 2016. Differential proteomic response of Sydney rock oysters (Saccostrea glomerata) to prolonged environmental stress. Aquatic Toxicology. 173:53-62.
  • McAfee D, Cole VJ, Bishop MJ (2016) Latitudinal gradients in ecosystem engineering by oysters vary across habitats. Ecology 97:929-939
  • McGowan, J., Beger, M., Lewison, R., Harcourt, R., Campbell, H., Priest, M., Dwyer, R., Lin, H-Y., Lentini, P., Dudgeon, C., McMahon, C., Watts, M., Possingham, H. 2016. Linking research using animal-borne telemetry with the needs of conservation management. Journal of Applied Ecology. DOI: 10.1111/1365-2664.1275
  • Nicastro A, Lee KM, Bishop MJ (in press) Assimilation of organic matter by two benthic consumers across gradients of latitude and of nutrient enrichment. Mar Freshwater Res (accepted, 4 May, 2016)
  • Payne, N. L., Smith, J. A., van der Meulen, D. E., Taylor, M. D., Watanabe, Y. Y., Takahashi, A., Marzullo, T. A., Gray, C. A., Cadiou, G., Suthers, I. M. (2016), Temperature dependence of fish performance in the wild: links with species biogeography and physiological thermal tolerance. Functional Ecology, 30: 903–912. doi: 10.1111/1365-2435.12618.
  • Poore AGB, Graham S, Byrne M and Dworjanyn SA. 2016. Effects of ocean warming and lowered pH on algal growth and palatability to a grazing gastropod. Marine Biology 163: 99.
  • Raftos DA, Melwani AR, Haynes PA, Muralidharan S, Birch GF, Amaral V, Thompson EL, Taylor DA. 2016. The Biology of Environmental Stress: Molecular Biomarkers in Sydney Rock Oysters (Saccostrea glomerata). Environmental Science: Processes & Impacts. DOI: 10.1039/C6EM00322B.
  • Schaeffer A, M Roughan, T Austin, JD Everett, D Griffin, B Hollings, E King, A Mantovanelli, S Milburn, B Pasquer, C Pattiaratchi, R Robertson, D Stanley, IM Suthers and D White. 2016. Mean hydrography on the continental shelf from 26 repeat glider deployments along Southeastern Australia (Paper #SDATA-15-00212A),
  • Schnell, A. K., Smith, C. L., Hanlon, R. T., Hall, K., Harcourt, R. 2016. Cuttlefish perform multiple agonistic displays to communicate a hierarchy of threats. Behavioral Ecology and Sociobiology. DOI: 10.1007/s00265-016-2170-7
  • Stelling-Wood TP, Clark GF and Poore AGB. 2016. Responses of ghost crabs to human modification of urban sandy beaches. Marine Environmental Research 116: 32-40.
  • Thompson EL, Parker L, Amaral V, Bishop, MJ, O’Connor WA, Raftos DA (2016) Wild populations of Sydney rock oysters differ in their proteomic responses to elevated carbon dioxide. Mar Freshwater Res http://dx.doi.org/10.1071/MF15320
  • Williams, G.D., Herraiz-Borreguero, L., Roquet, F., Tamura, T., Ohshima, K., Fukamachi, Y., Fraser, A. D., Gao, L., Chen, H., McMahon, C. R. Harcourt, R., Hindell, M. 2016. The suppression of Antarctic Bottom Water formation by melting ice shelves in Prydz Bay. Nature Communications DOI 10.1038/ncomms12577
  • Ushiama S, JA Smitha, IM Suthers, M Lowry and EL Johnston. 2016. The effects of substrate material and surface orientation on the developing epibenthic community on a designed artificial reef. Biofouling in press. Accepted 29 July16